Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2332 ATGGCCGTTGAGGCGCGCCATCTCAATCTCTTCCCCTCCCAACTCGTAACCAACCGCCAAGTCATGAATTCTGTGGATGCAAATGTCAACATGTATAACGCGCAACAGATTGCTTATTCTTCGTATTTTCCGTTATCCGCCGCCGTCACGGAGGCGGGGCTTCCTTCATCGGTTTACAATTCGCTCGGAAACGCCGTCAAAACTGAAAGTGGTTTAACCCACAACAACAGCGTTGTTGTTCCTCCCTTGTCGAGAAAGCGCTCCAGGGAGAATAACAGCTACAACGACTCGTTCTCGTTTCTCGGCCAAGACGTTTCTCTTCAGATCCAACAGCAGCAACTTGACATCGAGCATTTAATTATGCAACGAATGGAGAAGGTGAGAATAGAGATTGATCAGAAGCGAAAGCGCCAAGCGAGAAAGATAATCGACGCGATTGAGGCAGGCGTGATAAAAAAATTGAAGGCGAAAGAGGAAGAGATAGAGAAAATCGGAAAGCTTAATTGGGCGTTGGAAGAGAAAGTAAAGTCTCTGTGCATGGAAAATCAGATTTGGCGTGACTTGGCTCAAACGAACGAAGCTACGGCAAATGCTTTACGGCGTAATCTAGAACAGGTGTTGGCGCAACGCGGAATGGTGGACGACGGTGATGCAGCAGCTTTAATGGACGATGCTGAGTCTTGCTGTGGAAGCACCGAGGAGGACGGTGAAGGAAAGAAAGAGGTTGGATGGCGCACGATAAGAAGGGGATGCGCAAGTGTGAAGGATAAGAAGGAGGGTGGTTGCGGGATGATTGATGAGAGTAATGAAAGGTTTTGCAGGAACTGTGGGAAAGAAGAGTCGTGCGTGCTGATTTTGCCGTGCCGGCACCTGTGTTTGTGTACTGTATGTGGATCTACTCTCCACATTTGTCCTATATGTAAATCCTTTAAGACTGCTAGTGTTCATGTTAACATGTCCTAA 963 0.4766 MAVEARHLNLFPSQLVTNRQVMNSVDANVNMYNAQQIAYSSYFPLSAAVTEAGLPSSVYNSLGNAVKTESGLTHNNSVVVPPLSRKRSRENNSYNDSFSFLGQDVSLQIQQQQLDIEHLIMQRMEKVRIEIDQKRKRQARKIIDAIEAGVIKKLKAKEEEIEKIGKLNWALEEKVKSLCMENQIWRDLAQTNEATANALRRNLEQVLAQRGMVDDGDAAALMDDAESCCGSTEEDGEGKKEVGWRTIRRGCASVKDKKEGGCGMIDESNERFCRNCGKEESCVLILPCRHLCLCTVCGSTLHICPICKSFKTASVHVNMS* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2332 320 Coils Coil 154 174 - -
Vra5g2332 320 Pfam Zinc finger, C3HC4 type (RING finger) 270 309 - -
Vra5g2332 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 320 IPR013083 -
Vra5g2332 320 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 2-RELATED 1 319 - -
Vra5g2332 320 Coils Coil 189 209 - -
Vra5g2332 320 ProSiteProfiles Zinc finger RING-type profile. 273 308 IPR001841 -
Vra5g2332 320 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 319 IPR017066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2332 Vra-Chr5 30093764 30095250 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2332 267 309 Miscellaneous Gene Families AT4G39050 37.209 1.05e-06 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2332 5 30093764 30095250 Vra5g2332 5 30093764 30095250 ECH