Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2322 ATGGGTGTGAACGAAAATTTCAACAAGGATGATCATCATGAGTGTGTGGATGACGATGAAATTCCACTTCCTGGATTTCGATTTCATCCCACAGATGAAGAGCTTGTTAGTTTCTATCTTCGAAGGAAGCTTGACAAGAAACCCATCAGCATCGACCTCATCAAACAGATTGATATTTACAAATACGATCCTTGGGATCTTCCAAAGAGCAATGGAAGTGGAGGAGAGAAGGAGGGGTACTTCTTCTGCAGAAGAGGGAGGAAGTATAGAAATAGCATAAGGCCTAATAGAGTGACTGGGTCTGGGTTCTGGAAAGCAACCGGCATAGACAAACCAGTGTACTCACAAGGTGGAGAAGGCAATGACTGCATTGGACTTAAAAAAACACTAGTCTATTACCGTGGCAGTGCAGGCAAAGGCACCAAAACCGATTGGATGATGCACGAGTTTCGACTTCCTTCTAACACAGACCTTCCAAACTCCACCAATTATGTCGATGTTCCCCAAGAAGCTGAAATTTGGACGTTGTGTAGAATTTTCAAGAGAAACGTGTCACAGAGGAAGCAGGTGCCGGAGTTGAAACAAGTATCAGCCAAGCGGCATGCATTTTATGAGAAAAGCTCCAGAGCGAGCAATATGGAGTTTGACAGTGGTAACCAAGAATCGTATATAAACTTTGGTGGGCACTATCAGAAGGAGCAGAAAGCCGTGATCAACTATACAAACTGTGATAAAAGGAATCAGTTGTGTTGTACAGTGGCACAGCAGCAACCTCAATTAACTGCACCATCTTCTAACCTTTGGAGTAACCCACCTGGGAACGATTTCTTCACATTCGATAACTGGGATGAACTTGGATCGGTAGTGAAGTTTGCTGTTGATTCGCCTAGCTTGTAG 897 0.4381 MGVNENFNKDDHHECVDDDEIPLPGFRFHPTDEELVSFYLRRKLDKKPISIDLIKQIDIYKYDPWDLPKSNGSGGEKEGYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSQGGEGNDCIGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSNTDLPNSTNYVDVPQEAEIWTLCRIFKRNVSQRKQVPELKQVSAKRHAFYEKSSRASNMEFDSGNQESYINFGGHYQKEQKAVINYTNCDKRNQLCCTVAQQQPQLTAPSSNLWSNPPGNDFFTFDNWDELGSVVKFAVDSPSL* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2322 298 ProSiteProfiles NAC domain profile. 22 182 IPR003441 GO:0003677|GO:0006355
Vra5g2322 298 SUPERFAMILY NAC domain 23 182 IPR036093 GO:0003677|GO:0006355
Vra5g2322 298 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 296 - -
Vra5g2322 298 Gene3D NAC domain 31 186 IPR036093 GO:0003677|GO:0006355
Vra5g2322 298 PANTHER TRANSCRIPTION FACTOR JUNGBRUNNEN 1-LIKE 13 296 - -
Vra5g2322 298 Pfam No apical meristem (NAM) protein 24 152 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2322 Vra-Chr5 29992648 29994445 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2322 19 192 NAC Transcription Factor Family AT5G39820 58.115 4.76e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra5g2322 NAM 6.7e-35 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2322 5 29992648 29994445 Vra5g2322 5 29992648 29994445 ECH