Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2251 ATGGAGAGAATGTTCCCTCCAAAGAAGCCCTCAACTATGAATTCTCATGACAGACCCATGTGTGTTCAAGGAGACTCGGGTCTTGTCCTCACCACTGACCCAAAACCTCGCCTCCGTTGGACTGTTGAACTCCATGAACGTTTTGTCGATGCTGTTACTCAGCTTGGAGGCCCTGATAAGGCTACTCCTAAAACCATCATGAGGGTTATGGGTGTGAAGGGTCTCACCCTTTACCACCTCAAGAGCCATCTTCAGAAATTTAGGCTTGGCAAGCAGCCCCACAAGGAATTCAATGATCACTCGATTAAGGATGGTATGAGAGCTTCGGCTTTAGAACTGCAACGAAATACTGCTTCCTCTTCTGCCATGATTGGCCGCAACATGAATGATAACTCACACATGGTTGATGCGATTAGGATGCAAATAGAGGTGCAGAGAAGATTGCACGAACAACTTGAGGTTCAAAAACACCTTCAGCTGAGGATTGAGGCTCAAGGGAAATACATGCAGAGCATATTGGAGAAGGCTTATCAAACACTTGCTGGTGAGAACATGGCATCTGCGGCCAGTAACTTAAAGGGTGGTATCGTACCTCCTCAAAGCATTCCTGACATGGGGGTGTTGAAGGAGTTTGGTTCCCCTCTTGGTTTTTCTTCTTTTCAAGATCTTGAGAATATCTATGGTGGTGAGCAAATTGAGCTTCATCACAACATGGAGAAGCCACCCCTTGATCATGGATTTATGTCGATGAATGAGAGTTTGTGTTTGGGGAAGAAGAGGTCTAATCCTTACAGTGGGAGTGGGAAGAGCCCTTTGATTTGGAGTGATGATCTCAGGCTCCAAGACCTGGGAGGGCCAGCCTCATCTTGCCTTGGCCCTCAAGATGACCCTTTCAAAGGGGACCATATTCAGATTACACCACCAGGATCATTGGATAGAGGCAGCACCGACATTGATCCCATGTCAGACATCTATGACTCAAAGCCTGTGCTTCAGGGTGAAGCTGTTGTCGGGGAGAAAAAGTTTGATGCATCTATGAAGCTTGAAAGGCCATCACCAAGAAGAGCTCCTCTTCAAGCTGAAAGGATGAGTCCTATGATCAGCACTGGTACAATGGCACAAGGTAGAGGCTCACCATTTGGGTGA 1146 0.4703 MERMFPPKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASALELQRNTASSSAMIGRNMNDNSHMVDAIRMQIEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLAGENMASAASNLKGGIVPPQSIPDMGVLKEFGSPLGFSSFQDLENIYGGEQIELHHNMEKPPLDHGFMSMNESLCLGKKRSNPYSGSGKSPLIWSDDLRLQDLGGPASSCLGPQDDPFKGDHIQITPPGSLDRGSTDIDPMSDIYDSKPVLQGEAVVGEKKFDASMKLERPSPRRAPLQAERMSPMISTGTMAQGRGSPFG* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2251 381 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Vra5g2251 381 MobiDBLite consensus disorder prediction 346 381 - -
Vra5g2251 381 MobiDBLite consensus disorder prediction 1 20 - -
Vra5g2251 381 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Vra5g2251 381 Gene3D - 34 92 - -
Vra5g2251 381 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 4 330 - -
Vra5g2251 381 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Vra5g2251 381 Pfam MYB-CC type transfactor, LHEQLE motif 134 179 IPR025756 -
Vra5g2251 381 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 330 IPR044848 GO:0003700
Vra5g2251 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2251 Vra-Chr5 28706169 28708762 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra5g2251 Myb_DNA-binding 2.1e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2251 5 28706169 28708762 Vra5g2251 5 28706169 28708762 ECH