Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2248 ATGGCTCCAATGAGTCTCCCACCTGGGTTTAGGTTCCACCCCACTGATGAAGAGCTTGTTGCTTACTACTTGGAGAGGAAAATAACAGGTCGTTCAATAGAGCTTGACATCATTGCTGAAGTTGATTTATACAAGTGCGAACCTTGGGATTTGCCAGATAAATCATTCCTTCCAAGCAAGGACATGGAATGGTACTTTTACAGTCCTAGGGACAGGAAGTACCCAAATGGGTCAAGAACTAACCGTGCAACACAAGCTGGTTATTGGAAAGCTACAGGGAAAGATAGGCCAGTGCACTCTCAAAAGAAGCCTGTTGGCATGAAGAAGACATTGGTGTACTATAGAGGTAGAGCACCACATGGCATTAGAACGAACTGGGTTATGCATGAATACCGCTTGATTGAATCACTGCCTGGTGCTGCTCTTTCTTCTTTGAAGGATTCCTATTCGTTGTGTCGCATTTTCAAGAAGATGATTCAAATGCCTGCGAAACCTAGTAAAGAAGAAGAACAACAAGCCGAGGATGCAAAGAAGGAATCAATGTGGATCTCAGAAGAACAAATGTTGGGAGAAGACTCAAGTGGCACTGAGTTTTCCAGAGAAATGGAAACGGTGGAGGAAAAAATTCTCAATCACGAATACCCTAAATTTCCTTGTGACGCTTCTTCCTCTGATCTCACTCAAGGAACATGCACACCCACAGACACTGGTATAGCAGAAGATTTTCAACCACACTTTGCTTGCGATGAAGCAAACAGTGCAACTAATTCATATACAATGGGAATGGGATACCCCAGCAATCTATTTCAGGATGTGGAAATACCTTCTTTTGCTGCCATGCATTATCAATTCCCATACACACCTTTGGTGCTGGAAGACTTTCCTCAAATTACATTGCCAGAGACAAAGTCAACGAAACCAGAAATGAGTGATTCCTGCATGTTATATGACAGACACAGGGACTGCATGAATGGAACGCTAGAAGAGATAATCTCCTTGTGTTGCACTCAAGATAATAACGTCCCTTTTCCCATGCTAGAATGA 1044 0.4291 MAPMSLPPGFRFHPTDEELVAYYLERKITGRSIELDIIAEVDLYKCEPWDLPDKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATQAGYWKATGKDRPVHSQKKPVGMKKTLVYYRGRAPHGIRTNWVMHEYRLIESLPGAALSSLKDSYSLCRIFKKMIQMPAKPSKEEEQQAEDAKKESMWISEEQMLGEDSSGTEFSREMETVEEKILNHEYPKFPCDASSSDLTQGTCTPTDTGIAEDFQPHFACDEANSATNSYTMGMGYPSNLFQDVEIPSFAAMHYQFPYTPLVLEDFPQITLPETKSTKPEMSDSCMLYDRHRDCMNGTLEEIISLCCTQDNNVPFPMLE* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2248 347 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Vra5g2248 347 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 165 - -
Vra5g2248 347 MobiDBLite consensus disorder prediction 163 182 - -
Vra5g2248 347 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Vra5g2248 347 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Vra5g2248 347 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 1 165 - -
Vra5g2248 347 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2248 Vra-Chr5 28640996 28644455 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra5g2248 NAM 1.2e-39 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2248 5 28640996 28644455 Vra5g2248 5 28640996 28644455 ECH