Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2158 ATGATTTCAATAAAGAGAAGACAAAGAGGTGCTCCAGCCACAATGCATGCTCCAGCCACAATGAATGCTCCAGCCACAATGCACTCAGTTGGTCCTCAAGTTCATCCCAGTAGGCAAGATGAAGAGTACAATCTGAGGGAGACTGATCCACAGCTCGGGGGGGAGCGGTGGCCAAATGCCAGAAGAGGGTGGATGACTGGTGGTGAAAGATTCTCAAGCACACATGACCTTGTTGAGCAGATGTTCTTTCTGTATGTAAGGGTAGTGAAAGCCAAGGATCTTCATCGCAGCACTCTTACCTCAAGATGTGATCCTTATGTGGAAGTGAAGCTGGGGAACTACAAAGGGAGAACAAAGCACATAGAGAATAAAACAAACCCAGAATGGAACCAAGTCTACGCTTTCTCCAAAGACAGAATTCAATCTTCTGTTTTGGAAGTCATAGTGAAAGACAAAGAAATGTTGGGAAGAGATGATTGTATTGGAAGGGTGGCATTTGATCTCAACGAGGTTCCAACCAGAGTTCCCCCGGATAGTCCACTGGCTCCTCAGTGGTACAGACTCGATGACCGGCGAGGAGGTGGTGATATCATGCTTGCAGTGTGGATGGGAACTCAAGCTGATGAGGCCTTCTCAGAGGCTTGGCATTCTGATGCTGCCACTGTGTATGGAGAAGGTGTTTTCAATGTCAGATCAAAGGTTTATCTGTCACCAAAACTGTGGTATCTCAGGGTGAATGTCATTGAAGCACAAGATGTGATACCAAGTGACAGAAACCGGTTGCCAGAGGTGTTTGTCAAGGCTCAGATGGGGAGCCAAGTGCTGAAGACCAAGATATGTCCAACTAGGACAACCACACCAATTTGGAACGAAGATTTGGTCTTTGTGGCAGCTGAACCATTTGAGGAGAAGTTGACAATCACTGTGGAGGATCGCGTGCACCCTTCAAAAGATGAAGTACTTGGGAAGATAGTCTTGCCACTGACCCTCTTTGAGAAGCGGCTAGACCACAGGGCAGTTCATTCGCGCTGGTTTAATCTTGAGAAGTTTGGTTTTGGAATGATGGAAGCTGATAGGAGAAATGAGCTCAAATTTTCAAGCAGGATTCACCTAAGAATTTGCCTTGAAGGTGGATACCACGTCCTTGATGAGTCCACTTTGTACTCAAGTGACCAAAGACCAACAGCTAGACAGCTATGGAAGCAGCCCATCGGGGTACTTGAAGTAGGCATCTTGGGAGCACAAGGACTCCTCCCAATGAAGATGAGGGATGGCCATGGCAGCACAGATGCATACTGTGTGGCAAAGTACGGTCAAAAATGGGTCAGAACCAGAACAATTCTTGACACTCATAGTCCAAAATGGAATGAGCAATACACATGGGAGGTTTATGATCCATGCTCTGTGATAACACTTGGTGTTTTTGACAACTGCCATTTAGGTGGGGGCGAAAAAGCAACTGCGGGCACTGCAGCCAGGGATTCAAGAATTGGAAAGGTAAGAATTAGACTCTCAACACTTGAAGCTCATAGGATATACACTCATAGTTATCCACTTCTTGTTTTGCACCCTCATGGTGTCAAGAAAATGGGTGAGCTTCAGCTAGCCGTGAGGTTCACTAGCCTCTCACTGGCTAACATGGTTTACATTTATGCCCAACCATTGCTTCCAAAGATGCACTACTTGCGCCCTTTCACAGTAAACCAGATAGAGAGTTTGAGGTACCAAGCCATGAACATTGTGGCCGGGAGGCTTGGAAGAGCTGAACCTCCCCTGAGGAAGGAGGTGGTGGAGTACATGTTGGATGTTGACTCCAACATGTGGAGCATGAGAAGAAGCAAAGCCAACTTCTTCCGCATCATGTCACTTTTCTCTGGCATCATCACAATGGGGCAGTGGTTTAGCCAAGTTTGCCATTGGAAGAACCCCATCACATCCGTCCTGGTTCACATTCTCTTACTCATACTCATTTGCTACCCTGAATTGATACTTCCAACTTTGTTCCTCTACATGTTCTTGATCGGCCTGTGGAACTATAGGTTTAGGCCTAGAAACCCACCCCACATGGACACAAAACTCTCATGGGCAGATGCAGTTCACCCTGATGAACTTGATGAAGAGTTTGACACATTCCCAACTTCTAGACCGCATGATGTGGTGAGAATGAGGTATGACAAGCTTAGAAGTGTTGCTGGAAGGATCCAAACAGTGGTTGGGGACATAGCAACTCAGGGAGAGAGGTTTCATTCTCTACTGAGTTGGAGAGACACCAGAGCCACCAGCCTCTTCGTAGTGTTCAGTTTGTGTTCAGCTGTGGTTCTCTACGCAACTCCACCAAAAGTGGTGGCTATGGTAACAGGTTTGTATTATCTAAGGCACCCAAAGTTTCGTAGCAAACTTCCTTCTGTACCCAGCAACTTCTTCAAGAGGCTTCCAGCTAGAACAGATAGCATGCTGTGA 2460 0.4667 MISIKRRQRGAPATMHAPATMNAPATMHSVGPQVHPSRQDEEYNLRETDPQLGGERWPNARRGWMTGGERFSSTHDLVEQMFFLYVRVVKAKDLHRSTLTSRCDPYVEVKLGNYKGRTKHIENKTNPEWNQVYAFSKDRIQSSVLEVIVKDKEMLGRDDCIGRVAFDLNEVPTRVPPDSPLAPQWYRLDDRRGGGDIMLAVWMGTQADEAFSEAWHSDAATVYGEGVFNVRSKVYLSPKLWYLRVNVIEAQDVIPSDRNRLPEVFVKAQMGSQVLKTKICPTRTTTPIWNEDLVFVAAEPFEEKLTITVEDRVHPSKDEVLGKIVLPLTLFEKRLDHRAVHSRWFNLEKFGFGMMEADRRNELKFSSRIHLRICLEGGYHVLDESTLYSSDQRPTARQLWKQPIGVLEVGILGAQGLLPMKMRDGHGSTDAYCVAKYGQKWVRTRTILDTHSPKWNEQYTWEVYDPCSVITLGVFDNCHLGGGEKATAGTAARDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAVRFTSLSLANMVYIYAQPLLPKMHYLRPFTVNQIESLRYQAMNIVAGRLGRAEPPLRKEVVEYMLDVDSNMWSMRRSKANFFRIMSLFSGIITMGQWFSQVCHWKNPITSVLVHILLLILICYPELILPTLFLYMFLIGLWNYRFRPRNPPHMDTKLSWADAVHPDELDEEFDTFPTSRPHDVVRMRYDKLRSVAGRIQTVVGDIATQGERFHSLLSWRDTRATSLFVVFSLCSAVVLYATPPKVVAMVTGLYYLRHPKFRSKLPSVPSNFFKRLPARTDSML* 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2158 819 Pfam Plant phosphoribosyltransferase C-terminal 664 819 IPR013583 -
Vra5g2158 819 PANTHER C2 CALCIUM/LIPID-BINDING PLANT PHOSPHORIBOSYLTRANSFERASE FAMILY PROTEIN 32 819 - -
Vra5g2158 819 CDD C2D_MCTP_PRT_plant 406 536 - -
Vra5g2158 819 CDD C2B_MCTP_PRT_plant 83 205 - -
Vra5g2158 819 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 32 819 - -
Vra5g2158 819 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 241 396 IPR035892 -
Vra5g2158 819 ProSiteProfiles C2 domain profile. 65 186 IPR000008 -
Vra5g2158 819 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 83 219 IPR035892 -
Vra5g2158 819 ProSiteProfiles C2 domain profile. 222 345 IPR000008 -
Vra5g2158 819 SMART C2_3c 406 516 IPR000008 -
Vra5g2158 819 SMART C2_3c 83 180 IPR000008 -
Vra5g2158 819 SMART C2_3c 242 342 IPR000008 -
Vra5g2158 819 CDD C2C_MCTP_PRT_plant 242 394 - -
Vra5g2158 819 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 405 546 IPR035892 -
Vra5g2158 819 Gene3D C2 domain 229 375 IPR035892 -
Vra5g2158 819 Gene3D C2 domain 72 203 IPR035892 -
Vra5g2158 819 Gene3D C2 domain 387 543 IPR035892 -
Vra5g2158 819 Pfam C2 domain 405 519 IPR000008 -
Vra5g2158 819 Pfam C2 domain 241 347 IPR000008 -
Vra5g2158 819 Pfam C2 domain 84 186 IPR000008 -
Vra5g2158 819 ProSiteProfiles C2 domain profile. 388 517 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2158 Vra-Chr5 27439355 27442146 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2158 5 27439355 27442146 Vra2g1662 2 24749263 24752250 ECH
Vra8g0250 8 3149415 3153199 Vra5g2158 5 27439355 27442146 ECH
Vra3g0004 3 54861 58688 Vra5g2158 5 27439355 27442146 ECH
Vra5g2158 5 27439355 27442146 Vra5g2158 5 27439355 27442146 ECH