Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2152 ATGAGTGTTATGTATAGTCCTGTTTTCAAGTACTCAGATGTAGAGCCTCAGCTAAGGAAAAACCAAGAAATGGATTCAAGTATTGGAAATCCACAACAACACTGTCACCAACCCAATTCTGGATTACTGAGGTACTGTTCTGCTCCAAGCTCATTGCTCACAAGCCTTGTTCACAACAACATTCTTGACTGTGTCAACGAGGAATCTTTCACGAGTGAGATTCAACAGCATTATGTTCCATCCACAAGTTCAGAAATGGACACCATGTTGTCGAAATTGCTGCCATCCAACGATGGATGGAACAATTCAGAAGCTTTGCAAGAATTTGGAAGCAAGCCTGTGAAGCAGGAAATAGGGGAATCTGTTCCACAAGGACCACCACCACAACAACAGAATGAATATTCTTATGGTGGCTCTCATTTAATTTACCAGTCACAGGAAATTCAAGGCTTGCCAAATGGTTCTTCCAGTGCTTCTGGCAATGCTTTTGGTGGCTCTTTTGATGTGGTGAACACCATGGCCTCTGAGAATCCTCTTCAATCTAAAATGGGTGCCAGGAATTGCTCCAATCTCTTCAGGCAAAAGAGCTCCCCTGCTGGATTTTTCTCCATTGAAAATGATCTTGCAGCATTGAGAGAAGTAGATGCCTTTAAAGCCAATGATGTTTCAAATAGACAGGCTACTACATCAACTAGTGGCTATAGTGGTTCTCTTGCTTTCTCATCCAGGCCATCTTCATGCCTGAAAAAGATGCCACAAATTGCTGAAAATGAAAATGAAAATTGTGACCAAAGTAGGATCCTAGTTAATGAAGATGGTAACTCAAAGTTCTACATACCTAGCTTCACCACTGAAATCTGGGAAAGTTCTTCGTTCAATGCCCCCAAAACAGAAAGTGATGATGAAATCATGTTTTCCACCTCAAATGCTTTGGAATCTCAGGAATCAGATTTTGGCTATCAAAATCTTGGTCTGACCCACCATTTGAGCCTACCTAGCTCTTCTACAAAGATGTCATCCATAGAGAAGTTTCTTGAAGTTCAAGGTTCAATTCCTTGTAAAATTCGAGCCAAAAGAGGCTTTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTAAGAAGAACAAGAATCAGTGAAAGAATCAAGAAATTGCAAGACCTTTTCCCAAAATCAGAAAAGCAAACAAGCACAGCAGATATGTTGGATTTGGCAGTTGAGTACATTAAGGACCTTCGGCAACAAGTTAAGGTACTCTCAGATTGTAAAGCAAAATGCAAATGTAGTAGTAATGAGAGCCATTGCACTAGAACTTGTGCCTGA 1320 0.4106 MSVMYSPVFKYSDVEPQLRKNQEMDSSIGNPQQHCHQPNSGLLRYCSAPSSLLTSLVHNNILDCVNEESFTSEIQQHYVPSTSSEMDTMLSKLLPSNDGWNNSEALQEFGSKPVKQEIGESVPQGPPPQQQNEYSYGGSHLIYQSQEIQGLPNGSSSASGNAFGGSFDVVNTMASENPLQSKMGARNCSNLFRQKSSPAGFFSIENDLAALREVDAFKANDVSNRQATTSTSGYSGSLAFSSRPSSCLKKMPQIAENENENCDQSRILVNEDGNSKFYIPSFTTEIWESSSFNAPKTESDDEIMFSTSNALESQESDFGYQNLGLTHHLSLPSSSTKMSSIEKFLEVQGSIPCKIRAKRGFATHPRSIAERVRRTRISERIKKLQDLFPKSEKQTSTADMLDLAVEYIKDLRQQVKVLSDCKAKCKCSSNESHCTRTCA* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2152 439 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 31 431 - -
Vra5g2152 439 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 364 427 IPR036638 GO:0046983
Vra5g2152 439 CDD bHLH_AtbHLH_like 366 419 IPR045239 -
Vra5g2152 439 Pfam Helix-loop-helix DNA-binding domain 367 411 IPR011598 GO:0046983
Vra5g2152 439 SMART finulus 367 417 IPR011598 GO:0046983
Vra5g2152 439 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 361 411 IPR011598 GO:0046983
Vra5g2152 439 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 31 431 - -
Vra5g2152 439 Gene3D - 363 433 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2152 Vra-Chr5 27374674 27377664 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra5g2152 HLH 1.3e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2152 5 27374674 27377664 Vra2g1667 2 24809612 24813425 ECH
Vra5g2152 5 27374674 27377664 Vra5g2152 5 27374674 27377664 ECH