Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2128 ATGGATGATGGAAATGCTGAGCTTTCTGATAAGCTTTCAAATAATGTTCTATTTTTGAATCCAGAGTCATCTAGCAGTTTTCAGGCTTCAGCATCTGTGAACACAGTTCCTGAATTATGTAGGAGTAGCAGCAGAACATGCACTCACACTCACACCTGCAACCCACCTGGCCCTGATGCTGCTCACACACACACGTGCTATCACACTCACACCCAAATTTTTGCACCTGAAGACGATGACCACACCAACTCCAAACCAAAAAGGCCTTCTGGCAACCGAGAAGCTGTTAGGAAGTATAGGGAGAAGAAGAAGGCACACACAGCATACTTGGAGGAGGAAGTTAAGAAATTGCGTTTGGTGAATCAGCAACTAGCGAGAAAACTACAAGGGCAGGCAGTTCTTGAAGCAGAATTGGCAAGGTTGAGGAGCATTTTGGCACACCTAAAGGGGAAAATAGACAGTGATTTGGGTGCTTTCCCCTTTCAAAAGCAGTTTAACTCTTACATTCTGAAAGAAGGGGATGCAAGGACAAATGGCCTTCAGTGTCAGAACAAGTTGCCATGCTTTCATCCACATGCAGGATCATCATCCCAGGTCAACATTTGTGCATATGGTAAGTCCGTGAGTTCATGGGAAGGAAACTGCCAACCTGAAATTGTAGATTGTCATGTTGATGCAAATAATTTGACCAGTACTGAAGGACAAACTGTTGAGACAGTGGATAACTTCTTGTCATCTGCATCTCAAGAGTAA 753 0.4396 MDDGNAELSDKLSNNVLFLNPESSSSFQASASVNTVPELCRSSSRTCTHTHTCNPPGPDAAHTHTCYHTHTQIFAPEDDDHTNSKPKRPSGNREAVRKYREKKKAHTAYLEEEVKKLRLVNQQLARKLQGQAVLEAELARLRSILAHLKGKIDSDLGAFPFQKQFNSYILKEGDARTNGLQCQNKLPCFHPHAGSSSQVNICAYGKSVSSWEGNCQPEIVDCHVDANNLTSTEGQTVETVDNFLSSASQE* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2128 250 MobiDBLite consensus disorder prediction 75 99 - -
Vra5g2128 250 PANTHER BASIC LEUCINE ZIPPER 23 1 225 - -
Vra5g2128 250 MobiDBLite consensus disorder prediction 75 98 - -
Vra5g2128 250 Pfam Basic region leucine zipper 84 134 IPR004827 GO:0003700|GO:0006355
Vra5g2128 250 CDD bZIP 92 139 - -
Vra5g2128 250 SUPERFAMILY Leucine zipper domain 87 129 IPR046347 GO:0003700|GO:0006355
Vra5g2128 250 Gene3D - 74 149 - -
Vra5g2128 250 SMART brlzneu 77 147 IPR004827 GO:0003700|GO:0006355
Vra5g2128 250 PANTHER CCAAT/ENHANCER BINDING PROTEIN 1 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2128 Vra-Chr5 27052325 27054044 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2128 1 163 bZIP Transcription Factor Family AT2G16770 53.614 2.58e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vra5g2128 bZIP_2 1.6e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2128 K25785 - gmx:100527780 381.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2128 5 27052325 27054044 Vra5g2128 5 27052325 27054044 ECH