Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2032 ATGTGCCGTGGTCCAGAGAAATCAAAATCTCTATCAACTCCATCTTCATCTGCTGTAGAAGGTTCAACTAGAGCCGAAGACATGAAAGATCTAACTGTTTGTGCTGAAGATTCTTTTTCCTGCCTACTAGAGCTTGCTTCTAACAATGATTTTGAAGATTTCAAGCTAGCTTTAGATAGCGATATTTCTCTAATAAACAAAGTTGGCCTCTGGTATGTCCGTCAGATTGGATCCAAACAAATTGTTTTGGAGCACCGAACTCCTTTAATGGTTGCTTCAATGTATGGGAGTGTGGATGTTCTAAAACTTATACTCTCGTGTCCCGAGGTTGATGTCAATTTCTCCTGCGGGACAGATAGAAGCACTGCCCTTCATTGTGCTGCATCAAGTGGTTCTTTGAATGCAGTTGATGTTGTGAAATTGCTCTTGTCATCTGGCGCTGACATCAGATGTGTGGATGCTAATGGAAATCGTCCTGTTGATGTTATTGTTGTTCCTCCTAAGCTCAAAGGTCTTAAAGCATCTCTTGAAGATCTACTTTCAGATAGTGGTTGTGATGGGTCTGTTGGTGACTGTTTTATTCCACTGGCAGTTAATTCACCATGTTCTGATTCAGCGACTCATTTTTTATCACCTGAAAATGGGTTGCCATCCTCTCCTATGGCGTCCAAGTTTACTGATACTACGGTTAATTCTGCCTCCGAGAAGAAAGAATATCCAACTGACCCATCACTTCCTGATATAAAGAACAGCATATATGCTACAGATGAGTTTCGCATGTTTTCATTCAAGGTGCGACCCTGTTCCCGTGCATACTCTCATGATTGGACTGAATGTCCTTTTGTTCATCCTGGAGAGAATGCTCGTAGGAGAGACCCCAGAAAATTCCATTACAGTTGTGTGCCATGCCCTGAGTTTAGAAAGGGGGCTTGTAGACGCGGGGACATGTGTGAATATGCTCATGGAGTATTTGAGTGTTGGCTACACCCTGCCCAATATCGGACAAGGCTGTGCAAAGATGGTGTTAGTTGTAATAGAAGGGTTTGTTTTTTTGCCCACACAGCAGAAGAGCTGCGTCCATTGTACGTGTCCACTGGATCCGCTGTTCCTTCACCCCGTTCTTCTGCTTCTACTCCTAACGTCATGGACATGGCTGCTGCAATGAGCCTCTTTCCTGGTTCACCATCGTCACTTTCTGGCATGTCTCCATCTCCCTTCGCTCAGCAAATGTCTCCATCAACAGGTGGCATTCCTCACTCGTCTTCTGCTTGGCCGCAGCCAAACGTTCCAGCTCTTCATTTACCAGGAAGCAATATTCAAACTAGTCGACTAAGGTCTTCTCTTAATGCTCGTGACATGCCACCTGAAGACTTGGATGTGTTGCAAGATTTTGATGGTCAGCAACACCTTTTGAATGACCTGAGCTGTTTCTCTCAGCCCCGTCCTGGTGCCATTTCAGTTAGTCGATCTGGTCGGTCTAAGACACTAACTCCATCAAATCTTGATGATCTATTTTCTGCTGAAATTTCATCTCCTAGGTATTCTGACCCAGCAGCGGCTTGTGTATTTTCCCCAACGCACAAATCAGCTGTTTTTAACCAGTTTCAACAACTTCAAAGTTCCTTATCACCCATAAATACGAGTGTCTCGTCTCCTAGGAATGTTGAGCATACTCTTTTACAGGCTTCATTTGGTGTCTCTTCCCCGGGAAGGATGTCACCAAGAAGTTTGGAACCAATCTCTCCAATGAGCGCCCGATTATCTGCACTTGCGCAGCGTGACAAGCAGCAGCTGCGGAGTCTTAGTTCAAGGGATCTTGGTGCCCACAATCCTGTCTCAATTGTTGGGTCCCCAGGTAACTCCTGGTCTAATTGGGGTTCTCCTCATGGGAATGGAAAGGTAGATTGGTCGGTAAATGGAAATGAGCTAGGTCGATTGCAAAGGTCATCCTCATTTGAGCTTGGAAACAACGGGGAGGAGCCTGATCTGTCCTGGGTTCAATCCCTCGTGAAGGAATCGCCATCCGAGATTAAAGAGAAGTTGGCAGGTTCTGGTGGCCCTGTTGTATCTGCAGATGGGCAGAATTCCAATCCTCAAGTTGAGTCTATTGATCACTCTGTTCTAGGAGCATGGCTTGAGCAAATGCAGCTGGATCAGCTTGTAGTCTAA 2169 0.4537 MCRGPEKSKSLSTPSSSAVEGSTRAEDMKDLTVCAEDSFSCLLELASNNDFEDFKLALDSDISLINKVGLWYVRQIGSKQIVLEHRTPLMVASMYGSVDVLKLILSCPEVDVNFSCGTDRSTALHCAASSGSLNAVDVVKLLLSSGADIRCVDANGNRPVDVIVVPPKLKGLKASLEDLLSDSGCDGSVGDCFIPLAVNSPCSDSATHFLSPENGLPSSPMASKFTDTTVNSASEKKEYPTDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPEFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGVSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASTPNVMDMAAAMSLFPGSPSSLSGMSPSPFAQQMSPSTGGIPHSSSAWPQPNVPALHLPGSNIQTSRLRSSLNARDMPPEDLDVLQDFDGQQHLLNDLSCFSQPRPGAISVSRSGRSKTLTPSNLDDLFSAEISSPRYSDPAAACVFSPTHKSAVFNQFQQLQSSLSPINTSVSSPRNVEHTLLQASFGVSSPGRMSPRSLEPISPMSARLSALAQRDKQQLRSLSSRDLGAHNPVSIVGSPGNSWSNWGSPHGNGKVDWSVNGNELGRLQRSSSFELGNNGEEPDLSWVQSLVKESPSEIKEKLAGSGGPVVSADGQNSNPQVESIDHSVLGAWLEQMQLDQLVV* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2032 722 Pfam Ankyrin repeats (3 copies) 69 151 IPR002110 GO:0005515
Vra5g2032 722 SUPERFAMILY Ankyrin repeat 30 163 IPR036770 -
Vra5g2032 722 MobiDBLite consensus disorder prediction 680 699 - -
Vra5g2032 722 MobiDBLite consensus disorder prediction 591 607 - -
Vra5g2032 722 Gene3D - 26 176 IPR036770 -
Vra5g2032 722 SMART c3hfinal6 297 323 IPR000571 GO:0046872
Vra5g2032 722 SMART c3hfinal6 332 355 IPR000571 GO:0046872
Vra5g2032 722 MobiDBLite consensus disorder prediction 219 243 - -
Vra5g2032 722 MobiDBLite consensus disorder prediction 8 22 - -
Vra5g2032 722 MobiDBLite consensus disorder prediction 219 238 - -
Vra5g2032 722 MobiDBLite consensus disorder prediction 1 24 - -
Vra5g2032 722 MobiDBLite consensus disorder prediction 591 628 - -
Vra5g2032 722 Pfam CCCH-type zinc finger 302 322 IPR041367 -
Vra5g2032 722 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 23 720 - -
Vra5g2032 722 MobiDBLite consensus disorder prediction 614 628 - -
Vra5g2032 722 MobiDBLite consensus disorder prediction 399 425 - -
Vra5g2032 722 ProSiteProfiles Ankyrin repeat profile. 119 154 IPR002110 GO:0005515
Vra5g2032 722 ProSiteProfiles Zinc finger C3H1-type profile. 302 324 IPR000571 GO:0046872
Vra5g2032 722 PANTHER UNKEMPT FAMILY MEMBER 23 720 IPR045234 -
Vra5g2032 722 ProSiteProfiles Ankyrin repeat region circular profile. 119 153 - -
Vra5g2032 722 SMART ANK_2a 84 114 IPR002110 GO:0005515
Vra5g2032 722 SMART ANK_2a 119 151 IPR002110 GO:0005515
Vra5g2032 722 Gene3D - 298 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2032 Vra-Chr5 25922924 25927428 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vra5g2032 Ank_2 6.9e-10 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1683 2 25058944 25062506 Vra5g2032 5 25922924 25927428 PCT