Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1933 ATGGATAAAGTAGGGTGTGGTTTCAAGAGCTTCAGAACATTATTGGCTGTGGCTTCTATAACCTTCCCTGTTTTGATCACGTTTACTCTCATACACCAGAACTCAGTTTTCGATCTCGTCCATGGATTTAACGATTTGGCTGCAAGAGCTCACAATGCTTCTAATATTGTCTTGAAACAAGGAACTCAAAATGCGATCACTACTAATGTCGTGCAGGAAGGAGCTCAAAATGCCTCAATACAAGAGTTTCAAAATGCTACAGTTAAAACTGGGGGGGAAAAGGATCATAATGTTATTCCAGACTCAGCGCCTATTGATAAGGTTTTGGAAAACAAAAATCAGAATGCCAAGCCTGGAATCTTAGAAGAACCAGCTCAGACACTACCTCTCTTGGATATTGGTCCAAAGAATAATTCATCTGAAGATGGGGAGAATGTTTTGTCCCTATCTACTACCATCACCATTTCTAAAGACAAACTCCTTGATGGGCTTCTGGTTTCATCATTTGATGAAGCATCATGCTTTAGTAGATATCAATCTTACTTGTACCGCAAAAGGTCCTCTCACAAACCTTCTGAATATCTTATCTCCAAGTTACGAAAATATGAACATATTCATCGAAGTTGTGGACCTTCTACCAAATTCTACAACAAAATCATGAGAAAGGGCACAAAATTTAGCAAAAATGATGTTAGTACGAAATGCAAATATCTTGTCTGGACAGCTGCCAATGGATTAGGGAACAGAATAGTAACCTTGGTTTCAGCATTTCTTTATGCTATCCTTACAGATCGTGTTCTGCTTGTCAAATTTGGGACCGATATGTCTGGTCTCTTTTGTGAGCCATTTCCTGATTCCTCATGGTTATTGCCCAGGAGTTTTCCTTATTGGAAAGATCAGAAGCATATTGAAACATATGAAAACATATTAAACAATTTCAAGGTAAACAGTTCACAAGTACTTTTGCCACCATTTCTTATTCTTAATCTACAGCACACCCATGACCGTCACAATAATTTTTTTCATTGTGATGGGAGTCAAGATCTTCTTCAAAAAATTTCAGTGCTGATTTTACGGTCAGATCAATACTTTGTCCCTTCTCTTTTTATGATTCCATCGTTTAGAGAAGAACTAAGTAAAATGTTCCCCCAGAAGGACACAGTTTTTCACCATCTTGGACGTTACCTTCTTCACCCATCAAACGAAGCATGGGAAATAATTAGAAAATTTTATGAGGCACATCTAGCCAAGGCAAATGAGAGGATAGGTCTGCAGATTAGACTTTTTAATACTCATCGCCCACCACATCAAACTGTTATTAACCAAATAGTATCCTGCACCCTTCAGCATAAGTTGCTGCCTGATTTCAACGCACAAAAGTCAGTGGCTTCTCCTCTGAAGAAGACCTCAAAAGTTGTTTTAGTAGCATCTTTATTCTCACAATACGGTGAGAAGCTGAAGACTGTGTATCAGGCAAATAGAACTGTGACCGGGGAAGTGATAAGAGTTTATCAGCCCAGTCATGAAGAGCGTCAAAAGTCAAATGATGACATGCACAACATCAAGGCATGGACCGAAATATATTTGCTGAGTTTGTGTGATGCATTGGTTACTAGCACTAAGTCTACTTTTGGTTATGTTGCTCATAGTCTTGGAGGTTTGAAGCCATGGATTTTGCAGAGGGCATATAATGAAAGCATCCCAGATCCACCTTGTCGACATGCCAAGTCCATGGAGCCTTGTTTCCATTATCCACCCAAATATGACTGTAGGGCCAATAGCACAGTTGATTTTACTTCCCTTTTTCATCATATGAAGCATTGTGAAGATGTATCTGGTGGATTGAAGCTGGTTAATAGTAATCACTAG 1869 0.3906 MDKVGCGFKSFRTLLAVASITFPVLITFTLIHQNSVFDLVHGFNDLAARAHNASNIVLKQGTQNAITTNVVQEGAQNASIQEFQNATVKTGGEKDHNVIPDSAPIDKVLENKNQNAKPGILEEPAQTLPLLDIGPKNNSSEDGENVLSLSTTITISKDKLLDGLLVSSFDEASCFSRYQSYLYRKRSSHKPSEYLISKLRKYEHIHRSCGPSTKFYNKIMRKGTKFSKNDVSTKCKYLVWTAANGLGNRIVTLVSAFLYAILTDRVLLVKFGTDMSGLFCEPFPDSSWLLPRSFPYWKDQKHIETYENILNNFKVNSSQVLLPPFLILNLQHTHDRHNNFFHCDGSQDLLQKISVLILRSDQYFVPSLFMIPSFREELSKMFPQKDTVFHHLGRYLLHPSNEAWEIIRKFYEAHLAKANERIGLQIRLFNTHRPPHQTVINQIVSCTLQHKLLPDFNAQKSVASPLKKTSKVVLVASLFSQYGEKLKTVYQANRTVTGEVIRVYQPSHEERQKSNDDMHNIKAWTEIYLLSLCDALVTSTKSTFGYVAHSLGGLKPWILQRAYNESIPDPPCRHAKSMEPCFHYPPKYDCRANSTVDFTSLFHHMKHCEDVSGGLKLVNSNH* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1933 622 Pfam Xyloglucan fucosyltransferase 155 591 IPR004938 GO:0008107|GO:0016020|GO:0042546
Vra5g1933 622 Gene3D - 404 562 - -
Vra5g1933 622 Gene3D - 232 284 - -
Vra5g1933 622 PANTHER FUCOSYLTRANSFERASE 2-RELATED 8 621 IPR004938 GO:0008107|GO:0016020|GO:0042546
Vra5g1933 622 PANTHER GALACTOSIDE 2-ALPHA-L-FUCOSYLTRANSFERASE-LIKE PROTEIN 8 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1933 Vra-Chr5 25096625 25100143 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1933 155 618 Xyloglucan Fucosyltransferase1 AT2G03220 51.374 2.77e-166 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1933 K13681 - gmx:100799776 927.546