Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1932 ATGGCTAATGTAGAGAAGAGTTTCCAGAGTTTCAGAACGTTGTTAGTTGTAGCTTCTATAACTTTTCCCATGTTGATAATATTTTATGTCACACACCAAAATTCAATCTTTGATATCTTTCAAGGAATCCAGAATAATACTACTAATATTTGCGACTCAGTTGCAAGTGCAAAGAATAATACATTTGAAGATGAGAAGAATGATGAGAAGTTGTTTGGTGGACTTTTAGTTTCTTCATTTGATGAATCATCATGCGTTAGTAGGTTTCGGTCTTATTTGTATCGAAAAACTTCTCCTTATAAACCTTCTGAATATTTGATATTCAAGCTACGAAACTATGAAAATCTTCATCGAAATTGTGGACCATATACTAAGTCCTACAATGAAAGCATGAAAGATGGTGCAAACTTTAGCAAAAATGGTGTTGATTCGAAGTGCAAATATCTTATCTGGACAGCTATAGAAGGCTTGGGGAACAGGATGATATCCTTGGTTTCGACATTTCTTTATGCAATCTTCACAGATCGTGTTCTTCTTGTTAGATTTGACAATGACATGATGGATCTCTTTTGCGAGCCATTTCCAGATTCATCATGGTTGTTGCCCAAGAATTCTACTTATTGGAATGATTTGAGACAATTTAAAACATGGGAAAGCATGTTTGTGAATAACAATGGAAACGATCCGTTGACAGCTCTTTATCTTGATTTGATGAACAACAATGTTCGTGTTACTAATCGTTTTCATTGTGATCAAAATCAGGTTCTTCTACAAAATATTCCCGTGTTGATTTTACGATCAAATGAGTATTTTGCCCCTTCTCTTTATTTGACATACTCGTTTAGACAAGACTTCAACAGAATGTTTCCCGACAAAGACACTACTTTTCACCTTCTAGGACGCTATCTTTTCCACCCATCAAATGTAGTATGGGAACGAATTCAGAATGTATATGAAGCACACCTAGCCAAGGAAAATGAAAGAATTGGGTTGCAGATTAGGATATATAATACCCGTCAAACCCCAGAAGAAACAATAGTCAATGAAACTATATCTTGCCTCCAACAAAATACATTGTTGCCAAAATTGGACATGCAAAACTCAATGAATCCTCCTTTGGAAAAGAATACCTCAAAAGTTGTTCTAGTGGTATCTTTATACTCAAAATATGGTGAAAGACTAAAGAGTATATATGAAAGTAATACAAGTTCAAGTGAGGAAGTAATAAAAGTGTATCAACCAAGTCATGAAGAGCATCAAAATTCAGGTGATAACATGCACAACATAAAGGCATGGAGTGAAATATATTTGTTGGGTTTGTGTGATGCATTGGTTACAAGCCCTACATCCACTTTTGGGTATGTTGCTCATAGTCTTGGAGGAATGAAACCATTGGTTTTGCAAAGTATTTCTGGGAGAAGTATTCCAAATGTACCTTGTCAACGACTCAAGTATATGGAACCTTGTTTTCATGATCCTCCTAATTTTGATTGTATGGCCAATACCACAGTTGATTTTACTTCTATTTTTCCTAATATTAGACGTTGTGAAGATCAAAGAAGAGGAATGAAAATAATTAACACTTAA 1587 0.3478 MANVEKSFQSFRTLLVVASITFPMLIIFYVTHQNSIFDIFQGIQNNTTNICDSVASAKNNTFEDEKNDEKLFGGLLVSSFDESSCVSRFRSYLYRKTSPYKPSEYLIFKLRNYENLHRNCGPYTKSYNESMKDGANFSKNGVDSKCKYLIWTAIEGLGNRMISLVSTFLYAIFTDRVLLVRFDNDMMDLFCEPFPDSSWLLPKNSTYWNDLRQFKTWESMFVNNNGNDPLTALYLDLMNNNVRVTNRFHCDQNQVLLQNIPVLILRSNEYFAPSLYLTYSFRQDFNRMFPDKDTTFHLLGRYLFHPSNVVWERIQNVYEAHLAKENERIGLQIRIYNTRQTPEETIVNETISCLQQNTLLPKLDMQNSMNPPLEKNTSKVVLVVSLYSKYGERLKSIYESNTSSSEEVIKVYQPSHEEHQNSGDNMHNIKAWSEIYLLGLCDALVTSPTSTFGYVAHSLGGMKPLVLQSISGRSIPNVPCQRLKYMEPCFHDPPNFDCMANTTVDFTSIFPNIRRCEDQRRGMKIINT* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1932 528 PANTHER FUCOSYLTRANSFERASE 2-RELATED 8 527 IPR004938 GO:0008107|GO:0016020|GO:0042546
Vra5g1932 528 Gene3D - 310 469 - -
Vra5g1932 528 Pfam Xyloglucan fucosyltransferase 64 498 IPR004938 GO:0008107|GO:0016020|GO:0042546
Vra5g1932 528 Gene3D - 143 196 - -
Vra5g1932 528 PANTHER GALACTOSIDE 2-ALPHA-L-FUCOSYLTRANSFERASE-LIKE PROTEIN 8 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1932 Vra-Chr5 25088443 25091981 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1932 14 527 Xyloglucan Fucosyltransferase1 AT2G03210 42.045 5.76e-149 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1932 K13681 - gmx:100814715 665.225