Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1782 ATGGCTGAAATCATGCCTTCATCTGTTGACCAACCCGTTAAACTTGGTCATGAAAGTGAATATTCTGACGACGAAAAGAAGAAAAGGGTAGGATCGTTCAAGAAGGTGGCCATGAATGCCTCATTTAAGTTCAGGGGTTCCCTTACCAAGAAGGGGAGGAGGCACAGCAGGGTTATGTCTGTCGCTATCGAGGATGATCTTGATGCAGAAGAGTTGCAAGCTGTTGATGCTTTACGCCAAGCACTTATCTTGGAAGAACTATTGCCCTCAAGACATGATGATCACCATATGATGCTAAGATTCTTGAGAGCAAGGAAGTTTGACATTGAGAAAACAAAACAAATGTGGGCAGATATGCTTAAGTGGAGGCAGGAATTTGGTGCTGACACTATCTCGGAGGATTTTGAATTCGCTGAGCAAGATGAGGTTCTAAAATACTACCCACAAGGGCATCATGGGGTTGACAAGGATGGCAGACCCGTTTACATTGAAAAATTGGGTCAGGTTGACTCTGCCAAGCTGATGCAAGTAACAACAATGGATCGTTATCTCAAGTACCACGTAAAGGAGTTTGAGAGGACCTTTGCTGTTAAGTTGCCAGCTTGTTCCATTGCAGCAAAGAAGCACATTGACCAAAGCACAACTATTTTGGATGTGCAAGGAGTGGGTCTCAAGAGTTTGAACAAAGCAGCAAGAGATCTCCTCCAGAGGCTTCAGAAAATTGATGGTGACAACTACCCTGAGTCACTGAACCGTATGTTCATCATCAATGCTGGTTCTGGATTTAGGCTCTTGTGGAACACCATTAAGTCATTCCTAGATCCCAAGACCACTGCAAAAATCCATGTCCTAGGTAACAAATACCAGAGCAAGTTGCTTGAAATCATTGACGCCAGTGAACTTCCAGAGTTCTTGGGTGGTACTTGTACTTGTGCAGATAAAGGTGGCTGCATGCTTTCTGACAAGGGGCCATGGAATGACCCAGATATCATCAAGATGATTCAAAATGGCGAGGGCAAATGCAAGAGACAAACCTTGTCCGGGATTCAGGAGAAAATAGTCAAAGAAGACGAGAAAGCACATCAAAACGTTGGAAACAAAGAATCATTTCCACAGACATACGATGTTGATGTGCCATGCGTATCTCCAAAAGTGGTAAAGCCTGTGTGCAAATATGAGGAATTAGCTCCTGTGCTTGGAAAGCCAGTCAATTCATCTTGGAATAAATTAATAGAGAATGACAAAGGTGCACTTTCTAAAGGTGCAGATAGTTTTCCTAGCAAGACATCTGAGGTGAATACCAATCACTTTGTTGGTGGAATCATGGCCTTCATTATGGGGATTGTAACCATGATCCGCATGACAAAGAACATGCCAAGGAAACTCAATGAAGCAACACTGTTTAGCAATTCAGGATATTATGAGGGCACTATGATGAAAGCGGCCCCCTTCTCATGCATTGATTACATGACCTTTATGAAGCGTATGGCTGAACTAGAAGAGAAAGTCACTGTCCTCAACAAGAGATCTATCATGCCACCCGAAAAGGAGGAAGTGCTGAATAATGCTCTAAACAGAGTCACCACTCTCGAACAAGACTTGGTTGCAACCAAAAAGGCACTTGATGAAGCCCTTACTCGACAAAGAGAACTCCAAGCTGAAATTGACAAGAAAAGGAAGAAGAAGAAGTTGTTCCGCCGCTTCGGCTGTTTTGCTGCTTGA 1722 0.4344 MAEIMPSSVDQPVKLGHESEYSDDEKKKRVGSFKKVAMNASFKFRGSLTKKGRRHSRVMSVAIEDDLDAEELQAVDALRQALILEELLPSRHDDHHMMLRFLRARKFDIEKTKQMWADMLKWRQEFGADTISEDFEFAEQDEVLKYYPQGHHGVDKDGRPVYIEKLGQVDSAKLMQVTTMDRYLKYHVKEFERTFAVKLPACSIAAKKHIDQSTTILDVQGVGLKSLNKAARDLLQRLQKIDGDNYPESLNRMFIINAGSGFRLLWNTIKSFLDPKTTAKIHVLGNKYQSKLLEIIDASELPEFLGGTCTCADKGGCMLSDKGPWNDPDIIKMIQNGEGKCKRQTLSGIQEKIVKEDEKAHQNVGNKESFPQTYDVDVPCVSPKVVKPVCKYEELAPVLGKPVNSSWNKLIENDKGALSKGADSFPSKTSEVNTNHFVGGIMAFIMGIVTMIRMTKNMPRKLNEATLFSNSGYYEGTMMKAAPFSCIDYMTFMKRMAELEEKVTVLNKRSIMPPEKEEVLNNALNRVTTLEQDLVATKKALDEALTRQRELQAEIDKKRKKKKLFRRFGCFAA* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1782 573 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 7 566 - -
Vra5g1782 573 CDD SEC14 141 308 IPR001251 -
Vra5g1782 573 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 139 313 IPR001251 -
Vra5g1782 573 Coils Coil 489 509 - -
Vra5g1782 573 Pfam CRAL/TRIO domain 145 307 IPR001251 -
Vra5g1782 573 Gene3D - 127 338 IPR036865 -
Vra5g1782 573 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 7 566 - -
Vra5g1782 573 SMART sec14_4 139 310 IPR001251 -
Vra5g1782 573 PRINTS Cellular retinaldehyde-binding protein signature 97 119 - -
Vra5g1782 573 PRINTS Cellular retinaldehyde-binding protein signature 266 285 - -
Vra5g1782 573 PRINTS Cellular retinaldehyde-binding protein signature 299 308 - -
Vra5g1782 573 Coils Coil 224 244 - -
Vra5g1782 573 Gene3D - 56 126 - -
Vra5g1782 573 SUPERFAMILY CRAL/TRIO domain 141 335 IPR036865 -
Vra5g1782 573 SUPERFAMILY CRAL/TRIO N-terminal domain 65 134 IPR036273 -
Vra5g1782 573 Coils Coil 520 561 - -
Vra5g1782 573 SMART CRAL_TRIO_N_2 94 119 IPR011074 -
Vra5g1782 573 MobiDBLite consensus disorder prediction 1 27 - -
Vra5g1782 573 Pfam CRAL/TRIO, N-terminal domain 91 118 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1782 Vra-Chr5 23879318 23884112 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1782 5 23879318 23884112 Vra5g1782 5 23879318 23884112 ECH
Vra6g2023 6 36826562 36831373 Vra5g1782 5 23879318 23884112 PCT