Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1746 ATGTTCTTCTCTTCTACTCACACTTCAACAACTCTAGCCATGGCTTTCTCCTCCAAGCTACTTCTTCTTCTTGCTTCCTTCTTCCTATTTGCTTCCTTATCCTTTGGCCGGGATTTCTCCATTGTGGGCTATTCATCTGAGGACTTAAAGTCCATGGACAAGCTCATTCAACTCTTTGAATCCTGGATGTCAAGACACGGCAAGATCTACGAGACCATTGAGGAGAAGCTGCTTAGGTTTGAGATTTTCAAGGATAACCTAAAGCACATAGATGAGAGGAACAAGGTGACCACCAGCTACTGGCTTGGCTTGACCGAGTTTGCTGATTTGAGCCACCAAGAGTTTAAGAACAAGTATCTTGGTCTTAAGGTTGACTACTCTAGAACCAGAGAATCCCCAGAAGAGTTCACTTACAAAGACGTTCAATTGCCAAAGTCGGTGGATTGGAGAAAGAAGGGTGCTGTAACACAAGTCAAAAACCAAGGTTCATGTGGTAGCTGCTGGGCATTTTCCACTGTTGTAGCAGTTGAGGGAATAAACCAGATTGTGACCGGAAATTTGACATCATTGTCTGAGCAAGAGTTGATTGACTGTGACAGAACTTACAACAATGGTTGCAATGGGGGTCTCATGGACTACGCATTCTCCTTTATAGTAGAAAACGGTGGACTCCATAAAGAGGAAGACTACCCTTACATCATGGAGGAAGGTACCTGCGAGATGACAAAGGAAGAAACTGAAGTTGTTACTATTAGCGGGTACCATGACGTGCCACAGAACAATGAACAGAGCCTATTGAAGGCTCTTGCAAACCAACCCCTCAGTGTGGCCATAGACGCTTCAGGCAGAGATTTCCAATTTTATAGCGGGGGTGTTTTCGATGGACATTGCGGAAGTGACCTAGATCATGGTGTAGCAGCTGTGGGATACGGAACTGCGAAAGGTGTGGACTATATCATTGTGAAGAATTCATGGGGTTCTAAGTGGGGAGAAAAAGGATACATTAGAATGAAGAGAAACATTGGAAAGCCTGAGGGAATCTGTGGAATCTACAAGATGGCTTCTTATCCCACTAAGAAGAAATAA 1086 0.4411 MFFSSTHTSTTLAMAFSSKLLLLLASFFLFASLSFGRDFSIVGYSSEDLKSMDKLIQLFESWMSRHGKIYETIEEKLLRFEIFKDNLKHIDERNKVTTSYWLGLTEFADLSHQEFKNKYLGLKVDYSRTRESPEEFTYKDVQLPKSVDWRKKGAVTQVKNQGSCGSCWAFSTVVAVEGINQIVTGNLTSLSEQELIDCDRTYNNGCNGGLMDYAFSFIVENGGLHKEEDYPYIMEEGTCEMTKEETEVVTISGYHDVPQNNEQSLLKALANQPLSVAIDASGRDFQFYSGGVFDGHCGSDLDHGVAAVGYGTAKGVDYIIVKNSWGSKWGEKGYIRMKRNIGKPEGICGIYKMASYPTKKK* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1746 361 SMART pept_c1 143 358 IPR000668 GO:0006508|GO:0008234
Vra5g1746 361 CDD Peptidase_C1A 144 357 IPR039417 -
Vra5g1746 361 PRINTS Papain cysteine protease (C1) family signature 161 176 IPR000668 GO:0006508|GO:0008234
Vra5g1746 361 PRINTS Papain cysteine protease (C1) family signature 303 313 IPR000668 GO:0006508|GO:0008234
Vra5g1746 361 PRINTS Papain cysteine protease (C1) family signature 318 324 IPR000668 GO:0006508|GO:0008234
Vra5g1746 361 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 36 359 - -
Vra5g1746 361 Pfam Cathepsin propeptide inhibitor domain (I29) 59 115 IPR013201 -
Vra5g1746 361 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 318 337 IPR025661 -
Vra5g1746 361 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 161 172 IPR000169 -
Vra5g1746 361 SUPERFAMILY Cysteine proteinases 54 358 IPR038765 -
Vra5g1746 361 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 301 311 IPR025660 -
Vra5g1746 361 PANTHER - 36 359 - -
Vra5g1746 361 Pfam Papain family cysteine protease 143 358 IPR000668 GO:0006508|GO:0008234
Vra5g1746 361 SMART Inhibitor_I29_2 59 115 IPR013201 -
Vra5g1746 361 Gene3D Cysteine proteinases 38 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1746 Vra-Chr5 23625526 23627231 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1746 5 23625526 23627231 Vra5g1746 5 23625526 23627231 ECH
Vra6g2063 6 37252484 37255132 Vra5g1746 5 23625526 23627231 PCT