Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1676 ATGGTTACTACCACCGTTGATTCATCCTCTAATCATCACACACCTTCTGGTGCTGCCGATACCTATAACTTTCCGCGAAAAAATCTGCCATCTCCGTGGGCCCAGGTCGTTCGCGGTGCCGACTCTGAACCTAACCATCAATCACCGCCTTCTTCTTCCTCTTCATCTTCTCTCGATTCTGTTAATTCTAGCGGTCCTGCTGCTGATGCCGTTGATGCCGCCGTGAAACCTGTGTGGAAGAGACCGTCTAATGACGCCGGGGAAATTGGGCCTGTAATGGGCGCAATATCTTGGCCCGCTTTATCCGAGTCCACCAAGCCCACTCCTAAATTGATATCTGACTCCATCGACGATGAATCACTCACCCCTCCTAAGGGTCCTGTTGTTTCAGACTCTCCTCAGAAACAAGCTTCTGATAATGTGAAGCCTAGTCCTGCAATAAACCATGGTATGGGTAATAGGCAAAGGTCAATGAAGCGTGGAGGGGCAAATGGCAATAATGTTGGCTATGGTCCTGTTCAGAACAACTTCTCTGGCGCTTCCCCTCATTTTCCTCCACCGCCACCCTTTCCCGTGCTTCAGATTCCTCCAAATTCATTTGCACATGGAGTACCCGGGGTTCCAGTTCCTTCTCCGAGAGAACCTTACAGGAACAAAAACTGGGATACGAGGCCTCCGATTGGAGGGTTTATCCCGCCAATGAATGATAATCGGAGTCCCTCTCGCCGTGGTAATGCTGGGCATCATCCTCGTGGAGATGGATCCTATCATAACAGTTATGGCAACAGGCGTGATCAGGATCGTGGAGGTTATGCAAATACCAGAGATACTCATGTAAATCATCAGAGGATGCCTCCAAGGGGACTAATGAGGCCTCCGCCGCCAAATCCTGCTTCATTTATGGGGCCTCAGCCTATGCGACCCTTTGCAAACCCTCCCGGGTTTCCTGAATTCTATTATTTCCCAACACTACAATTTGAACCCTTTGGGGGAATGCCGTTTTTAACACATGCACCTCCTCCTGCAATGTTCTACCCGGTTGCCGAAACCCCTCTCGCCAGTACAATAGTCAACCAAATTGATTATTATTTTAGTGATGCTAATTTAGTGAGGGATGAGTATTTAAGGTCCAACATGGATGAACAAGGATGGGTTCCTATTTCTTTGATTGCAAGCTTCCCACGTGTTAGAAGTTTGACAAGCAACATTAAGTTGATACTGGAATCATTGAGAGCTTCCACTGTCGTCGAAGTGCAGGGTGACAAGTTGAGGAGGCGTAATGAGTGGACCAAGTGA 1296 0.4838 MVTTTVDSSSNHHTPSGAADTYNFPRKNLPSPWAQVVRGADSEPNHQSPPSSSSSSSLDSVNSSGPAADAVDAAVKPVWKRPSNDAGEIGPVMGAISWPALSESTKPTPKLISDSIDDESLTPPKGPVVSDSPQKQASDNVKPSPAINHGMGNRQRSMKRGGANGNNVGYGPVQNNFSGASPHFPPPPPFPVLQIPPNSFAHGVPGVPVPSPREPYRNKNWDTRPPIGGFIPPMNDNRSPSRRGNAGHHPRGDGSYHNSYGNRRDQDRGGYANTRDTHVNHQRMPPRGLMRPPPPNPASFMGPQPMRPFANPPGFPEFYYFPTLQFEPFGGMPFLTHAPPPAMFYPVAETPLASTIVNQIDYYFSDANLVRDEYLRSNMDEQGWVPISLIASFPRVRSLTSNIKLILESLRASTVVEVQGDKLRRRNEWTK* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1676 431 SUPERFAMILY "Winged helix" DNA-binding domain 343 430 IPR036390 -
Vra5g1676 431 MobiDBLite consensus disorder prediction 258 274 - -
Vra5g1676 431 MobiDBLite consensus disorder prediction 209 291 - -
Vra5g1676 431 CDD LAM 356 426 - -
Vra5g1676 431 MobiDBLite consensus disorder prediction 127 143 - -
Vra5g1676 431 MobiDBLite consensus disorder prediction 1 18 - -
Vra5g1676 431 ProSiteProfiles La-type HTH domain profile. 346 431 IPR006630 -
Vra5g1676 431 MobiDBLite consensus disorder prediction 41 64 - -
Vra5g1676 431 PANTHER LA-RELATED PROTEIN 1B 5 431 - -
Vra5g1676 431 MobiDBLite consensus disorder prediction 1 191 - -
Vra5g1676 431 Pfam La domain 356 411 IPR006630 -
Vra5g1676 431 PANTHER LUPUS LA PROTEIN-RELATED 5 431 IPR045180 -
Vra5g1676 431 Gene3D - 345 431 IPR036388 -
Vra5g1676 431 SMART la 350 428 IPR006630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1676 Vra-Chr5 23111004 23115511 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1676 5 23111004 23115511 Vra5g1676 5 23111004 23115511 ECH
Vra6g2013 6 36754302 36758167 Vra5g1676 5 23111004 23115511 PCT