Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1633 ATGATCCCTTCACTCTCTCTCCATATTATTCCTCTTCTCATTCTTCACATCCTCGTCCTAGCACCGCCGTCGTCGGCGGAAGCCCGCAATGGACAGTGGCACCTCCTCCAACAAAACATCGGCATTGTCGGCATGCACATGCAGCTTCTCCACAACGACCGAGTCATCATACTAGACCGCACTGACTTTGGATTCTCCAACATGACCCTCGCCGACGGTAGATGCCGCAAAAACTCAAATGAGATGGTCGTCAAAACCGACTGCACCGCACATTCCATCGAATACGACGTCGCAGCCAACACAGTCCGCGCCCTCTTCGTCCAAACCAACGTCTGGTGCTCCTCCGGTTCGGTTTCCCCCGACGGAACACTAGTCCAAACCGGTGGCTTCAACGACGGAGATCGTGCAGTCAGAACCTTCACCCCGTGCCGCACCTGCGACTGGCGCGAAGTTAACAATGGACTATCAACTCGAAGATGGTACGCCACCAACCACATCTTGCCAGATGGTCGACAAATAATAATCGGTGGTAGAAGACAATTCAACTACGAGTTTTACCCCAAGACAGAAACCACGGCTATGAACACTTACAGTTTACCTTTTCTCGTTCAAACAAACGACGCCTCGGCGGAAAATAATCTCTACCCCTTTGTTTTCTTAAACGTCGATGGCAATCTTTTCATCTTCGCAAACAACCGCGCTATCTTATTCGATTACAATAAGAACCGTGTCGTCAGAACCTACCCTCAAATACCCGGTGGAGACCCACGGTGCTATCCCAGTACCGGTTCCGCGGTTTTGCTTCCGTTGAAGAATCTTCGAGAATCAAATCTGGAAGCCGAGGTTTTGATTTGCGGTGGAGCCCCGAGAGGAGCTTATCCGGATACCCTATCGGGTCGGTTTACCGGAGCGTTGAAAACGTGTGCTAGGATTAAAATAAGCGACCCGAACCCGAGTTGGGTGATGGAAACCATGCCAGGTGCGAGAGTCATGAGTGACATGGTTTTACTCCCAAACGGCGATGTTTTAATTATTAATGGAGCTTCAGAAGGGACGGCGGGCTGGGAATTGGGTCGGGACCCGGTATTGAGTCCATTTCTATATAAACCAAATAATCTGATCGGGTCGAGATTTGAGGTCCAAAACCCGTCAGATATTCCGCGAATGTACCACGCCAGTGCCATTGTGCTTCGTGATGGTCGCGTTCTTGTGTCTGGGAGCAATCCTCATGCGTGTTACAATTTCACCAACGTAATTTTCCCAACGGAATTACGGTTGGAAGCGTTTTCTCCTTCTTATCTTGAGCCCAGATTCTCTATCCTGCGTCCCACAATAGTGTCCCCTTCGTCCCAAACAATAGTGAAGTACGGTGAGACATTGAAGGTTGGATTTGAGGTGACCGCGAGTTTGTCTAAGGATTCGGTGTCGGTTACGATGTTGGCGCCGCCTTTTGCAACGCACTCCTTCTCCATGAATCAGAGGTTGTTGGTTTTGGAGGCGCAAGATTTGAGCAAGGTCGGGAAATCGACTTACGAGGTGGAAGTTACGGCCCCGGGTTCCGGTGTTCTTGCACCGCCGGGTTTCTATCTGCTATTTGTGGTACATCAAGAAATTCCAAGCCACGGTATATGGGTTCGGATGGTGTGA 1647 0.5027 MIPSLSLHIIPLLILHILVLAPPSSAEARNGQWHLLQQNIGIVGMHMQLLHNDRVIILDRTDFGFSNMTLADGRCRKNSNEMVVKTDCTAHSIEYDVAANTVRALFVQTNVWCSSGSVSPDGTLVQTGGFNDGDRAVRTFTPCRTCDWREVNNGLSTRRWYATNHILPDGRQIIIGGRRQFNYEFYPKTETTAMNTYSLPFLVQTNDASAENNLYPFVFLNVDGNLFIFANNRAILFDYNKNRVVRTYPQIPGGDPRCYPSTGSAVLLPLKNLRESNLEAEVLICGGAPRGAYPDTLSGRFTGALKTCARIKISDPNPSWVMETMPGARVMSDMVLLPNGDVLIINGASEGTAGWELGRDPVLSPFLYKPNNLIGSRFEVQNPSDIPRMYHASAIVLRDGRVLVSGSNPHACYNFTNVIFPTELRLEAFSPSYLEPRFSILRPTIVSPSSQTIVKYGETLKVGFEVTASLSKDSVSVTMLAPPFATHSFSMNQRLLVLEAQDLSKVGKSTYEVEVTAPGSGVLAPPGFYLLFVVHQEIPSHGIWVRMV* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1633 548 Pfam Galactose oxidase-like, Early set domain 442 546 IPR015202 -
Vra5g1633 548 SUPERFAMILY E set domains 441 547 IPR014756 -
Vra5g1633 548 SUPERFAMILY Galactose oxidase, central domain 92 435 IPR011043 -
Vra5g1633 548 PANTHER OXIDASE, PUTATIVE, EXPRESSED-RELATED 21 547 - -
Vra5g1633 548 CDD E_set_GO_C 442 547 IPR015202 -
Vra5g1633 548 Gene3D - 27 437 IPR037293 -
Vra5g1633 548 PANTHER SECRETED PROTEIN-RELATED 21 547 - -
Vra5g1633 548 Pfam Glyoxal oxidase N-terminus 45 287 IPR009880 -
Vra5g1633 548 Gene3D Immunoglobulins 441 548 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1633 Vra-Chr5 22766599 22768906 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1633 5 22766599 22768906 Vra5g1633 5 22766599 22768906 ECH
Vra6g2056 6 37181365 37183403 Vra5g1633 5 22766599 22768906 PCT