LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra5g1617	ATGTCCACAATGCTAAAATCAGGCATTAAAATTGAGGACAAAAAACTGAAGAAAACAGCTCAGGCCAGCTCCAGAAAAGGGTGTATGAGAGGTAAAGGAGGTCCCGAGAATGCCAGTTGCACCTACAAAGGTGTGAGACAGAGAACCTGGGGGAAATGGGTTGCTGAAATCCGTGAACCCAACCGTGGTGCTAGACTCTGGCTAGGGACATTTGAAACCTCTCATGACGCTGCTTTGGCTTATGATGCTGCAGCACGTAAGCTTTACGGCCCTGATGCCAAACTCAATTTACCAGACATTCCTGTGCCCCCAGTGAAACCATCTCAGTTTCCACCACCACCACCACCACCTCCTCGTACCAACACTCAAACTCCTCATATGGAGAATCTGCAACACCCTCTGATGCAAAACAACATCGACATTCCAACTTGTTCTAATTTCAATTTCAATCCTGCAGTTTCCATGGCATCTCATGAAGTTGGAGTCACTCCAATTTACACCAGTGATTGCATCGTGTCTCTTCCCTTGGACACCAATCCTAAGCCAATTGCAACCTACACAAAACTTGAGGGGATTGAGGGAGAGTTTTCTCCATCTTGGGAGACAATGAACGAGAGTTTACCTGTTTTTGATGATTCTATCTGGGCCGAAGCTGCTATGTCTCTAGATCTTCCTCTAATTGCAGCAGAGAATGAGATTTACACACAGGAGAACAACAATTTGGCCGATGTGGATATGTGGGACCCTCAAGCTCCATGGTGCATGTAA	768	0.4622	MSTMLKSGIKIEDKKLKKTAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHDAALAYDAAARKLYGPDAKLNLPDIPVPPVKPSQFPPPPPPPPRTNTQTPHMENLQHPLMQNNIDIPTCSNFNFNPAVSMASHEVGVTPIYTSDCIVSLPLDTNPKPIATYTKLEGIEGEFSPSWETMNESLPVFDDSIWAEAAMSLDLPLIAAENEIYTQENNNLADVDMWDPQAPWCM*	256

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra5g1617	255	Gene3D	AP2/ERF domain	41	99	IPR036955	GO:0003700\|GO:0006355
	Vra5g1617	255	ProSiteProfiles	AP2/ERF domain profile.	41	98	IPR001471	GO:0003700\|GO:0006355
	Vra5g1617	255	Pfam	AP2 domain	41	90	IPR001471	GO:0003700\|GO:0006355
	Vra5g1617	255	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C	15	250	-	-
	Vra5g1617	255	MobiDBLite	consensus disorder prediction	99	122	-	-
	Vra5g1617	255	MobiDBLite	consensus disorder prediction	99	123	-	-
	Vra5g1617	255	CDD	AP2	40	99	IPR001471	GO:0003700\|GO:0006355
	Vra5g1617	255	PRINTS	Ethylene responsive element binding protein signature	42	53	IPR001471	GO:0003700\|GO:0006355
	Vra5g1617	255	PRINTS	Ethylene responsive element binding protein signature	64	80	IPR001471	GO:0003700\|GO:0006355
	Vra5g1617	255	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D	15	250	-	-
	Vra5g1617	255	SMART	rav1_2	41	104	IPR001471	GO:0003700\|GO:0006355
	Vra5g1617	255	SUPERFAMILY	DNA-binding domain	41	99	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra5g1617	Vra-Chr5	22591116	22593001	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Vra5g1617		AP2	3.2e-14	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra6g2067	6	37303083	37304757	Vra5g1617	5	22591116	22593001	PCT