Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1543 ATGCAATTGTACGTCATGAGCTCGTACTCAAAACCACTTTTAAATTGGAACAACGGTACACCAATCTCTACAATCCCTATGTGCACCACTCCGCACGCTGTAATGCCAACCTTTGCACCTTTGCCAGAGCCAGACCTCTCCTTAAACATCAGCCCTCCATTCACTTCAGATCCTGACGCTAAACAACTGGAAACAAGCTGCAGCGGATTCACATTAACCACCAAAACGCTTTACACCGATCTGTGCTCAACCTCGGATTCTGGTAGCAGTGGAAGCGATTTAAGCCATGAAAATGGTTTTCGCCACATTGTCTACAACCTTGGTCATCGTGAACCGACATTGAGCTTAGGCTCTGGAAGGGAAAGTTTGAATCCTTATCCTATACAAGGAGCTGTGTCGAGAAACTTCAATCACCTCCACAACTACCAACCTCAGACCAACACCGTTGATTTCAAACGAAATGCTAGAGGCATTCAAGGTGTTAAAAGAAGCTCGAGAGCTCCTAGAATGAGATGGACCACTACCCTCCACGCTCACTTTGTTCATGTGGTTCAGCTTCTTGGTGGACATGAAAGGGCAACTCCGAAGTCTGTGTTAGAGTTAATGAACGTGAAGGATCTAACTCTAGCTCACGTGAAGAGTCACTTGCAGATGTATAGAACAGTGAAGAGCTCTGACAAAAGCAGCGCAGGTCATGGGCAGACAGGTATAGGGTTGAGCCAAAAGCCAGGGATTGTCGATCTGCATGGAGCCTTAGCTTGTGAGAGACCAAATTTGCCACAGCCGCTGCTAAAATCCCACTGGACGCCATGGCAATCATCGATGGAGACAAATTCAATAAATTACATAGAGAGCCCCATTATAAATTCAATGTATTCTGATATGAGAGAAAAGCAAACCATGGTGGGTGGACAGCATTATGGAGGCCTGTCGAATTGCATGGAGGAGAAATTGGAATCTTGCACTTTGTCACGTTCCGATATGACGCTAGACCTAGAATTTACCCTTGGAAGGCCCACTAGTTCCAAAGAGATCACGCAGAAACAACAGTGTTGA 1056 0.4583 MQLYVMSSYSKPLLNWNNGTPISTIPMCTTPHAVMPTFAPLPEPDLSLNISPPFTSDPDAKQLETSCSGFTLTTKTLYTDLCSTSDSGSSGSDLSHENGFRHIVYNLGHREPTLSLGSGRESLNPYPIQGAVSRNFNHLHNYQPQTNTVDFKRNARGIQGVKRSSRAPRMRWTTTLHAHFVHVVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSSDKSSAGHGQTGIGLSQKPGIVDLHGALACERPNLPQPLLKSHWTPWQSSMETNSINYIESPIINSMYSDMREKQTMVGGQHYGGLSNCMEEKLESCTLSRSDMTLDLEFTLGRPTSSKEITQKQQC* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1543 351 SUPERFAMILY Homeodomain-like 165 222 IPR009057 -
Vra5g1543 351 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 27 344 - -
Vra5g1543 351 Pfam Myb-like DNA-binding domain 169 220 IPR001005 -
Vra5g1543 351 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 27 344 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vra5g1543 351 Gene3D - 167 224 - -
Vra5g1543 351 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 168 221 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1543 Vra-Chr5 22039346 22044303 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra5g1543 Myb_DNA-binding 2.4e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1543 5 22039346 22044303 Vra5g1543 5 22039346 22044303 ECH
Vra6g1903 6 35638416 35643218 Vra5g1543 5 22039346 22044303 PCT