LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra5g1536	ATGAGCAACGCCAACTGTAGCAAGCCTTCTTCTCCCCAACCTACGATTAAACAACGTAGGCTCACTCGACAGGGGAGGCTCCGATACCTCAGTGACAAAGACGCTGCTCTGCATTCCACCACTTCTCTACCCGCTTCTCCTCTTCCCTCTTTCAAGTCCGGTTCGTCTTCTGACCATTGGTCTTCCTCTGCGGTTCCGCAACCGCTTCCGCGTCCCGACTCCCCGTTGACTCGTCGATACGATCATCATCAACTCGGATCGCCCCCTTTCGAACACCCTGGCTTCGCTTTTCGCAGGTCGGTGGATCATGATGCGGTGAGAAGTATAAGGTCTACCAGCAATTTGGGTAGACCTTTTTTTGATCCAGTAGCTTCAAATGCCAAACACGATTTAAGAGTGAACATTCCACCTGCAAGAGTGTTGGCAGGCAATTCCAGTTCATGTAAAGATCACACAGAACGCTCTCAAGATAATGACTCTGAAAATGTTTCTGACTTGAGATTGCATTTTTCGGCCAAGAGTGCCCCCAACAGCATATTCTCCAGCCCTGTTACTAGTCCACGTAGATCCAGCAATGTAGATTTCTATGATCCTTCCATCATTTTTCATCATGATTTTAATGACATTTTGAGAGTGTCACCGGTTAAAACTGCTCAGAGTCCAGACCGGACTCCTCTGCGCAGCCCAGGGAGCCTCCTCAATCCAGAGGGATGTCAGAGTCAGCTTCATAAACATAGCTCAAGAGTGTTGCCTGAAAATAGTCATGTTGATGCACATCCACTGCCCCTTCCTCCTAGAGCGTCACCACCACCAGCACAGTCACCTCCCCAGCATCAACCAAGTATCGTGCACCTCACTGTAGATAATTCGCCTTCAATGAAAGGTCAATGGCAGAAAGGAAAACTTATTGGGCGGGGATCATATGGATCTGTTTATCACGCAACCAACTTATACTCACGTGCATTCCTTTTGCGTCACAGAGAGACTGGAGCCTCGTGTGCAATGAAGGAGGTGGAAATGTTCCCCGATGATCCTAAATCTGCTGACTGCATAAAGCAACTTGAACAGGAAATTAGAATTCTCCGTCAATTACACCATCCCAACATTGTGCAGTACTATGGAAGTGAATTAGATGGCGATCGACTGTACATATATATGGAGTATGTTCATCCTGGATCGCTTGATAAGTTTATGCATGACCATTGTGGAGCTATGACAGAATCTGTAGTTCGCAACTTCACAAGACATATTCTCTCTGGATTGGCATACTTGCATAGTACCAAGACTATTCACAGGGATATCAAAGGTGCAAACTTGTTGGTCGATGCAACGGGCATGGTTAAACTTGCGGATTTCGGGGTTTCAAAAATTCTGACAGAGAAATCGTATGAACTTTCATTGAAGGGTAGTCCCTACTGGATGGCTCCCGAGCTCATGAAGGCTGCCATAAAGAAAGAATCCAGTCCTGACGTTGCCATGGCCATTGATATATGGAGCTTAGGGTGCACTATCATCGAAATGCTGACAGGAAAACCTCCTTGGAGGGAATACGAAGGGCCGCAAGCCATGTTCAAGGTACTGCACAAATCCCCAAAAATACCGGAGAATTTGTCATCAGATGGACAGGATTTCCTTCAGCAGTGCTTCAGAAGGAACCCGGCAGATCGACCATCGGCAGCACTGCTTCTTACTCATGCCTTTGTACAAAATTTGCACGATCAAGATGCTCTTCATTCACAAGGGCAAAGCTGTCCCAGAGGAGACCCTGGATCTGGAGATGATTCAAGTAGACATAGCCCTGCTAACAGTTCAAGAAGTAATAACCGGGGAGTGCCAGCCTCCATTGGCGCACGGTTTTTGCATAAAATTCAAAATTTAATAGGTGACACTTCGAAAAAATATGACAGCGAGGAATCTGATCATGTCACTTCTTCTCGTAGCTCTCCCTGCTCGATGACAGAAATAAACAGTCCTCAATCTAGTGCCCTCAATTACATGGCCAATTCCAGCAACATACCCCTCACCACCGTTATGAGAATCATCAGGCACATTTGA	2055	0.4662	MSNANCSKPSSPQPTIKQRRLTRQGRLRYLSDKDAALHSTTSLPASPLPSFKSGSSSDHWSSSAVPQPLPRPDSPLTRRYDHHQLGSPPFEHPGFAFRRSVDHDAVRSIRSTSNLGRPFFDPVASNAKHDLRVNIPPARVLAGNSSSCKDHTERSQDNDSENVSDLRLHFSAKSAPNSIFSSPVTSPRRSSNVDFYDPSIIFHHDFNDILRVSPVKTAQSPDRTPLRSPGSLLNPEGCQSQLHKHSSRVLPENSHVDAHPLPLPPRASPPPAQSPPQHQPSIVHLTVDNSPSMKGQWQKGKLIGRGSYGSVYHATNLYSRAFLLRHRETGASCAMKEVEMFPDDPKSADCIKQLEQEIRILRQLHHPNIVQYYGSELDGDRLYIYMEYVHPGSLDKFMHDHCGAMTESVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDATGMVKLADFGVSKILTEKSYELSLKGSPYWMAPELMKAAIKKESSPDVAMAIDIWSLGCTIIEMLTGKPPWREYEGPQAMFKVLHKSPKIPENLSSDGQDFLQQCFRRNPADRPSAALLLTHAFVQNLHDQDALHSQGQSCPRGDPGSGDDSSRHSPANSSRSNNRGVPASIGARFLHKIQNLIGDTSKKYDSEESDHVTSSRSSPCSMTEINSPQSSALNYMANSSNIPLTTVMRIIRHI*	685

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra5g1536	684	ProSiteProfiles	Protein kinase domain profile.	297	568	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra5g1536	684	MobiDBLite	consensus disorder prediction	216	297	-	-
	Vra5g1536	684	SUPERFAMILY	Protein kinase-like (PK-like)	276	605	IPR011009	-
	Vra5g1536	684	ProSitePatterns	Protein kinases ATP-binding region signature.	303	336	IPR017441	GO:0005524
	Vra5g1536	684	MobiDBLite	consensus disorder prediction	1	20	-	-
	Vra5g1536	684	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	11	678	-	-
	Vra5g1536	684	MobiDBLite	consensus disorder prediction	141	163	-	-
	Vra5g1536	684	MobiDBLite	consensus disorder prediction	216	247	-	-
	Vra5g1536	684	MobiDBLite	consensus disorder prediction	262	277	-	-
	Vra5g1536	684	PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA	11	678	-	-
	Vra5g1536	684	MobiDBLite	consensus disorder prediction	595	611	-	-
	Vra5g1536	684	MobiDBLite	consensus disorder prediction	576	612	-	-
	Vra5g1536	684	Pfam	Protein kinase domain	298	567	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra5g1536	684	MobiDBLite	consensus disorder prediction	630	654	-	-
	Vra5g1536	684	MobiDBLite	consensus disorder prediction	278	296	-	-
	Vra5g1536	684	MobiDBLite	consensus disorder prediction	1	94	-	-
	Vra5g1536	684	Gene3D	Transferase(Phosphotransferase) domain 1	294	595	-	-
	Vra5g1536	684	SMART	serkin_6	297	568	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra5g1536	684	MobiDBLite	consensus disorder prediction	35	64	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra5g1536	Vra-Chr5	21978453	21983746	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra5g1536	20	570	MAP Kinase Kinase Kinase	AT5G66850	44.646	2.82e-145	437

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Vra5g1536		Pkinase	2.8e-63	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra5g1536	5	21978453	21983746	Vra5g1536	5	21978453	21983746	ECH
	Vra6g1895	6	35549157	35554674	Vra5g1536	5	21978453	21983746	PCT