Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1533 ATGGTCAAAGAAAGTAAGGAATGCAGAGTGTGCCAGCGAGAAAGCTCGTTTGATGATGATAATAGTAGTATTAGTATTGGTATTAGTATAGATATGAAAACAAATCGCATCTCAAGAGTCATACAAGTTAGACTTCAACACCCACCAACTATACAAAACCCCACTTTCCTGGAAGTACCCTTTTCTTCCAATCTGCTCTGCATGCACCTTTTCACTTCACTCTCTTCTTCTCTTCTCCTTATATATAAACACAACCAACCCCAACAACAACACTCCCTCCTTTCTCCCATGGAAGCTATCAACAGAACCTCCTCCACCGCCTCTTCCTCCTCTGACTCTTCCTCTTCCGACTCCAACCCTCACAGAATCAAAGGCCCCTGGAGCGCCGAGGAGGATCGGATCCTCACCCGCCTCGTCGACCGCTACGGACCCCGCAACTGGTCCCTCATCAGCCGCTACATTAAAGGCAGGTCTGGCAAGTCCTGCCGCCTGCGCTGGTGCAACCAGCTCAGCCCCACCGTCCAGCACCGGCCCTTCTCTCCCCAAGAGGACGAGACCATCATCGCCGCCCACTCCCAGTACGGAAACAGGTGGGCCACCATTGCCCGTTTGCTGCCGGGTCGAACCGATAACGCCGTTAAGAACCACTGGAACTCCACGCTCAAGCGCAGAGCCAAGGCTTTTCTTGACATTAACGTCAACAACGCCAACAACGAAGGAGCCACTTCTTCTGCTCCTTCTCGCTCCTTCGAGGACGACCCGTTGACCGCGTTGACTCTCGCTCCCCCCGGTCTGTCTAGTGCCGCCGTGGCCGAGGACACCGTGCTGGATCACCGGGTCTCGGGCGAGAGTGGGCCGGCGGGGTTTTGGGATATGATGAGAGATGTGATCGCGAGGGAAGTGAGGGAATATGTGTCTTCCAATTTTTCTGATAACTCAAACTTTCATTAA 951 0.53 MVKESKECRVCQRESSFDDDNSSISIGISIDMKTNRISRVIQVRLQHPPTIQNPTFLEVPFSSNLLCMHLFTSLSSSLLLIYKHNQPQQQHSLLSPMEAINRTSSTASSSSDSSSSDSNPHRIKGPWSAEEDRILTRLVDRYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPTVQHRPFSPQEDETIIAAHSQYGNRWATIARLLPGRTDNAVKNHWNSTLKRRAKAFLDINVNNANNEGATSSAPSRSFEDDPLTALTLAPPGLSSAAVAEDTVLDHRVSGESGPAGFWDMMRDVIAREVREYVSSNFSDNSNFH* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1533 316 Gene3D - 123 175 - -
Vra5g1533 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 119 174 IPR017930 -
Vra5g1533 316 CDD SANT 178 221 IPR001005 -
Vra5g1533 316 Gene3D - 177 247 - -
Vra5g1533 316 ProSiteProfiles Myb-like domain profile. 119 170 IPR001005 -
Vra5g1533 316 ProSiteProfiles Myb-like domain profile. 171 221 IPR001005 -
Vra5g1533 316 CDD SANT 126 168 IPR001005 -
Vra5g1533 316 PANTHER MYB PROTEIN-RELATED 95 302 - -
Vra5g1533 316 MobiDBLite consensus disorder prediction 101 126 - -
Vra5g1533 316 Pfam Myb-like DNA-binding domain 127 185 - -
Vra5g1533 316 SUPERFAMILY Homeodomain-like 121 217 IPR009057 -
Vra5g1533 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 175 225 IPR017930 -
Vra5g1533 316 PANTHER MYB TRANSCRIPTION FACTOR 95 302 - -
Vra5g1533 316 SMART sant 175 223 IPR001005 -
Vra5g1533 316 SMART sant 123 172 IPR001005 -
Vra5g1533 316 MobiDBLite consensus disorder prediction 237 256 - -
Vra5g1533 316 MobiDBLite consensus disorder prediction 101 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1533 Vra-Chr5 21964897 21966111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1533 122 239 MYB Transcription Factor Family AT3G50060 68.644 5.11e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra5g1533 Myb_DNA-bind_6 2.2e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1533 5 21964897 21966111 Vra5g1533 5 21964897 21966111 ECH
Vra6g1894 6 35544445 35545397 Vra5g1533 5 21964897 21966111 PCT