Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1528 ATGCAACCTACATCGAACGGTTCTGATTCGCAAGCAACGGAGCAGAACCAGCAGACGCCGCCTCCGCCGCCACCGCCGCAGCCTGTGCCCGTCCCGCCGCAGTGGCTCCCGATGCAGTACCCAGCGGCTGCCATGGTAATGCAGCACCACATGATGCCGCCTCAACATTATGCCGCGCCGCCGCCGCCTCCGCAGCCCTATGTCGCCTATCACCAGTACCAGCAGCAGCTCTCGCACGTGTCGCACGCGCACCATCAGGGATCCAGCGCCGAGAACAAGACCGTATGGGTCGGCGATTTGCATCACTGGATGGATGAAAATTATCTCCACCGCTGTTTCGCTTCTACCGGCGAGATTTCCTCCATTAAGGTTATTCGAAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTTGAATTCTATTCGCATGGCACAGCTGAGAAAGTTTTGCAGAACTATGCTGGGATATTGATGCCTAACACAGAGCAACCTTTCCGCCTGAACTGGGCATCATTTAGCACAGGAGACAAGCGTTCAGATAATGTCCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCTGATGTTACAGATAGCATGTTGCATGAAACTTTTTCTAATAGATACCCATCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAATGAGAGGTCTCAGGCTATGACTGAAATGAATGGAGTTTACTGCTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCTAGGAAAACGTCTGGCTATCAACAAGGAAGTCAGTCAAATGGCACATCCAACCAATCTGAAGCTGATGCTACGAACACAACTATATTTGTCGGAGGTCTTGACCCTAATGTTACTGCTGAAGATCTTAGGCAGCCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAAGGATGTGGTTTTGTACAATTTGCAAACAGAAATAATGCTGAAGAGGCATTGCAGAAGCTAAATGGGACAACTATTGGCAAGCAAATGGTTCGTCTTTCGTGGGGCCGCAATCCAGCAAATAAGCAGTTTAGAGGAGATTTCGGTAGTCCTTGGAATGGGGCATATTACGGGGGAGCTGTTTATGATGGTTATGGGTATGCTTTACCAGCTCCTCATGATCCCAGTATCTATGCTGCTGCTTATGGGGCATACCCTATTTATGGAGGACACCAGCAGCAAGTAAGTTAA 1266 0.4826 MQPTSNGSDSQATEQNQQTPPPPPPPQPVPVPPQWLPMQYPAAAMVMQHHMMPPQHYAAPPPPPQPYVAYHQYQQQLSHVSHAHHQGSSAENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQNYAGILMPNTEQPFRLNWASFSTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFSNRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKTSGYQQGSQSNGTSNQSEADATNTTIFVGGLDPNVTAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQMVRLSWGRNPANKQFRGDFGSPWNGAYYGGAVYDGYGYALPAPHDPSIYAAAYGAYPIYGGHQQQVS* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1528 421 MobiDBLite consensus disorder prediction 262 286 - -
Vra5g1528 421 MobiDBLite consensus disorder prediction 1 35 - -
Vra5g1528 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 257 IPR000504 GO:0003723
Vra5g1528 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 162 IPR000504 GO:0003723
Vra5g1528 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 354 IPR000504 GO:0003723
Vra5g1528 421 SUPERFAMILY RNA-binding domain, RBD 62 174 IPR035979 GO:0003676
Vra5g1528 421 MobiDBLite consensus disorder prediction 1 16 - -
Vra5g1528 421 Gene3D - 276 393 IPR012677 -
Vra5g1528 421 CDD RRM3_NGR1_NAM8_like 290 361 - -
Vra5g1528 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 173 IPR000504 GO:0003723
Vra5g1528 421 MobiDBLite consensus disorder prediction 17 35 - -
Vra5g1528 421 SMART rrm1_1 292 359 IPR000504 GO:0003723
Vra5g1528 421 SMART rrm1_1 94 169 IPR000504 GO:0003723
Vra5g1528 421 SMART rrm1_1 187 261 IPR000504 GO:0003723
Vra5g1528 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 363 IPR000504 GO:0003723
Vra5g1528 421 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 28 420 - -
Vra5g1528 421 SUPERFAMILY RNA-binding domain, RBD 281 391 IPR035979 GO:0003676
Vra5g1528 421 MobiDBLite consensus disorder prediction 266 286 - -
Vra5g1528 421 CDD RRM2_SECp43_like 185 264 - -
Vra5g1528 421 CDD RRM1_SECp43_like 94 174 - -
Vra5g1528 421 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 28 420 - -
Vra5g1528 421 Gene3D - 173 275 IPR012677 -
Vra5g1528 421 SUPERFAMILY RNA-binding domain, RBD 169 280 IPR035979 GO:0003676
Vra5g1528 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 265 IPR000504 GO:0003723
Vra5g1528 421 Gene3D - 92 172 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1528 Vra-Chr5 21905849 21910122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1528 95 370 Eukaryotic Initiation Factors Gene Family AT4G34110 27.046 1.68e-28 116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1528 5 21905849 21910122 Vra5g1528 5 21905849 21910122 ECH
Vra6g1889 6 35503276 35509071 Vra5g1528 5 21905849 21910122 PCT