Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1519 ATGTCTGGTCTGGGTGAACGCCAAACGGTTCCCCTTTCGGTGCTGCTGAAGCGTGAGTTGGCCAACGAGAAAACTGAGAAGCCGGATGTTGTGCTCGTGCACGGTCAAGCCAGTGAGAATAAGAAAGGAGAGGATTTCACGCTGCTGAAGACGGAATGCCAGAGGGTGGTGGGAGATGGGGTTTCTACGTATTCTGTTTTTGGGCTATTTGATGGCCATAATGGATCTGCTGCCGCTATTTATGCCAAGGAGAATCTTCTGAACAACGTTTTAAGTGCAATTCCTTCTGATCTTAACAGAGATGAGTGGGTTTCAGCGTTGCCTAGGGCTTTGGTTGCAGGCTTTGTGAAAACTGATAAAGATTTTCAAAGAAAAGCACAAACATCAGGAACAACTGCAACCTTCATGATTATAGATGGATGTGTTGTGACAGTTGCATCAGTTGGTGATTCCCGTTGCATACTTGAACCTCATGAGGGTGGGATTTATTACTTGTCAGCAGACCATAGACTAGATAGCAACGAAGAGGAGAGGGTCCGCATCACTTCTAGTGGAGGTGAGGTTGGTCGTCTAAATACAGGGGGAGGCACAGAGGTTGGTCCTTTGAGATGTTGGCCAGGTGGTTTGTGTCTCTCCCGATCCATTGGTGATAAGGATGTTGGTGAATTTATTGTCCCTGTACCACACGTAAAGCAAGTGAAGCTTTCTACCGCTGGAGGCAGGATCATTATCAGCAGTGATGGTGTCTGGGATGCTCTAACAGCAGAAATGGCCTTTGATTGCTGTCGTGGCATGTCAGCTGAGGTTGCGGCACCACATATTGTGAAAGAAGCCGTGCATGCAAAGGGACTTAGAGATGACACAACCTGCATTGTTATTGATGTATATCCGCAGGAGAAGCCACCTACTTCTGGGACAACACAAAAGAAACCGGTAAAAGGAAGGCTTAAGTCCATTTTTCGCAAAAAGTCCTCTGAATCATCATCTTACATTGACAAACAATACCTTGAGCCAGATGTGGTACGGGAACTATATGAGGAAGGATCTGCTATGCTTTCAGAGAGGTTGGAAACAAAATATCCACTCTGCAACATGTTCAAGTTGTTTGTCTGCGCAGTGTGTCAGGTAGAGATTAAACCTGGGGAGGGTATTTCCATACACGTGGGTGCGTCTAATCCAGGAAGGTTGCGTCCCTGGGATGGACCTTTCCTTTGTTCAAGTTGCCAGGAGAAGAGAGAAGCCATGGAAGGGAAGCGAACATCGGACTTAGCAGCGGAAGTGACTAATGAATTATCATGTAAATTTGCATATTGA 1314 0.4635 MSGLGERQTVPLSVLLKRELANEKTEKPDVVLVHGQASENKKGEDFTLLKTECQRVVGDGVSTYSVFGLFDGHNGSAAAIYAKENLLNNVLSAIPSDLNRDEWVSALPRALVAGFVKTDKDFQRKAQTSGTTATFMIIDGCVVTVASVGDSRCILEPHEGGIYYLSADHRLDSNEEERVRITSSGGEVGRLNTGGGTEVGPLRCWPGGLCLSRSIGDKDVGEFIVPVPHVKQVKLSTAGGRIIISSDGVWDALTAEMAFDCCRGMSAEVAAPHIVKEAVHAKGLRDDTTCIVIDVYPQEKPPTSGTTQKKPVKGRLKSIFRKKSSESSSYIDKQYLEPDVVRELYEEGSAMLSERLETKYPLCNMFKLFVCAVCQVEIKPGEGISIHVGASNPGRLRPWDGPFLCSSCQEKREAMEGKRTSDLAAEVTNELSCKFAY* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1519 437 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 5 423 - -
Vra5g1519 437 ProSiteProfiles PPM-type phosphatase domain profile. 29 295 IPR001932 -
Vra5g1519 437 PANTHER ALPHABET, ISOFORM E-RELATED 5 423 - -
Vra5g1519 437 Pfam Protein phosphatase 2C 59 278 IPR001932 -
Vra5g1519 437 CDD PP2Cc 40 295 IPR001932 -
Vra5g1519 437 SUPERFAMILY PP2C-like 40 295 IPR036457 -
Vra5g1519 437 SMART PP2C_SIG_2 48 295 IPR001932 -
Vra5g1519 437 Gene3D - 22 303 IPR036457 -
Vra5g1519 437 SMART PP2C_4 19 293 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1519 Vra-Chr5 21846224 21851634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1519 1 421 PP2C-type Phosphatase Gene Family AT1G47380 76.960 0.0 684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1519 5 21846224 21851634 Vra5g1519 5 21846224 21851634 ECH
Vra6g1871 6 35353926 35358961 Vra5g1519 5 21846224 21851634 PCT