Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1515 ATGCAAGGTTTGAGTGTTCGAAAGATGCTGAAGACAATGCCATCTAAAGCTTTGATCACCATAATCAATTTTGTTTTCCTCATTGTCTTTCTGCTTGTTTATGCCACCATTCTTCCCCATCCATCTTCTGACTATTTGGAGAATGCGGGCTCCCTTGTGAGGTGCTCCTTGGCCGAATGTCATCACAAGAAGGCAGAAAAAAGCCTGAAAATGAAAGCGGTATGGGAAGAACCTCAAGAAAACCAACACAGGGAAAAGAATGTAGTACCAAGCTTTTTTGGCGAGATGGGGAAAGGAACGAGGATAGGGATGGTGAACATGGAAGAAGGCCTTGTGAGAGAATGGAACACGCATGGGGAAACCACGACGGTTCATTTCCAGAGGGTATCACAGTCTCTGAACTGGACAGACCTGTTTCCTGAATGGATAGACGAGGAAGAAGAGAATGAAGTGCCGTCGTGTCCGGAGATACCTATGCCAGAGTTTGCAGAATATGGATGCATGGACATCATCGTTGCCAAGCTGCCATGCAGGTATCCCGAAAAAGGGTGGAACAGGGACGTTTTTAGGTTGCAAGTTCATCTTATAGTTGCGAATTTAGCCACAAAGAATGGAAAGAAGGATTGGAGAGGGAAGACTAGATTGGTTTTTTGGAGCAAGTGTAGACCAATGATGGAACTGTTTCCATGCGACAACTTGGTTAAGCGGGAAGGTGAATGGTGGTACTATGAAGCTGACATGAATAAGTTACAACACAAAGTTTCATTGCCCGTCGGTTCGTGCAAGTTGGCCATGCCTCTCTGGGAACAAGGAAGGAAGGAGTTGTTGAAGAGTGAGAAAAACGGTGGGAAAATGAAGCGCGAAGCCTATGCGACAGTGTTGCATTCCTCAGAAGCATACGTTTGCGGCGCAATAACACTAGCACAAACCCTCCTCCAAACAGGGACCAAACGCCACCTAATCCTCCTCGCGGATAAGTCAATCTCTGTTCCCAAACGCAGGGCGCTATCGGAAGCGGGTTGGAAGATCCGAATGATTACCCGGATCCGAAACCCAAGGGCAGAGAAGGGAAGCTACAATGAATACAACTACAGCAAGCTCCGACTGTGGCAGCTCACCGACTACGACAAAATAATCTTCATCGATTCTGACATCATCGTTCTCCGGAACCTGGACATCCTCTTCCGCTTCCCGCAGATATCCGCCACGGGGAACGACCAATCGATATTCAACTCCGGGATAATGGTGATCGAACCTTCGAAGTGCACGTTCGGCGAGCTGATGCGGCTTCGCGATGTCATCGTTTCGTACAACGGAGGGGACCAGGGGTTTCTGAACGAGGTGTTGGTGTGGTGGCACAGGCTGCCGCGGAGGGTGAACCTTCTAAAGAATTTCTGGGCGAACACGAGTGCAGAGGCAAGGGAAAAGAATGCGCTCTTCGGGGCGGAGCCGGCGGAGGTGTATGCGATTCACTATCTGGGGTGCAAGCCCTGGCACTGCTTCAGGGACTACGACTGCAATTGGGACACCCTGGAGCAGAGGATGTACGCCAGTGACGTGGCGCACCGGAGATGGTGGAAGGTTCACGACGCCATGGAGGAGGGTTTGCAAAGATTATGTGGGTTGACGAAACGGCGTCGCACTGAGCTGAAGTGGGAGAGGAGGAAGGCTCGGAGCATGGGCTTTTCTGATGGACATTGGAAAATCAATATCACTGATCCCAGACGATTTACCCCTCTTCTCATCCATTAG 1752 0.4989 MQGLSVRKMLKTMPSKALITIINFVFLIVFLLVYATILPHPSSDYLENAGSLVRCSLAECHHKKAEKSLKMKAVWEEPQENQHREKNVVPSFFGEMGKGTRIGMVNMEEGLVREWNTHGETTTVHFQRVSQSLNWTDLFPEWIDEEEENEVPSCPEIPMPEFAEYGCMDIIVAKLPCRYPEKGWNRDVFRLQVHLIVANLATKNGKKDWRGKTRLVFWSKCRPMMELFPCDNLVKREGEWWYYEADMNKLQHKVSLPVGSCKLAMPLWEQGRKELLKSEKNGGKMKREAYATVLHSSEAYVCGAITLAQTLLQTGTKRHLILLADKSISVPKRRALSEAGWKIRMITRIRNPRAEKGSYNEYNYSKLRLWQLTDYDKIIFIDSDIIVLRNLDILFRFPQISATGNDQSIFNSGIMVIEPSKCTFGELMRLRDVIVSYNGGDQGFLNEVLVWWHRLPRRVNLLKNFWANTSAEAREKNALFGAEPAEVYAIHYLGCKPWHCFRDYDCNWDTLEQRMYASDVAHRRWWKVHDAMEEGLQRLCGLTKRRRTELKWERRKARSMGFSDGHWKINITDPRRFTPLLIH* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1515 583 SUPERFAMILY Nucleotide-diphospho-sugar transferases 285 537 IPR029044 -
Vra5g1515 583 Coils Coil 580 583 - -
Vra5g1515 583 PANTHER UDP-GLUCURONATE:XYLAN ALPHA-GLUCURONOSYLTRANSFERASE 2 7 576 IPR030519 GO:0005794|GO:0009834|GO:0015020|GO:0045492
Vra5g1515 583 PANTHER GLYCOGENIN SUBFAMILY MEMBER 7 576 - -
Vra5g1515 583 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 284 534 IPR029044 -
Vra5g1515 583 CDD GT8_Glycogenin 288 532 - -
Vra5g1515 583 Pfam Glycosyl transferase family 8 293 397 IPR002495 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1515 Vra-Chr5 21813382 21818689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1515 89 582 Glycosyltransferase AT4G33330 66.135 0.0 688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1515 5 21813382 21818689 Vra5g1515 5 21813382 21818689 ECH
Vra6g1866 6 35285848 35289921 Vra5g1515 5 21813382 21818689 PCT