LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra5g1504	ATGGCTCTTCTTCTTGACAACTGTGAAGGCATTCTACTCTCCTTGGACTCACACAAGTCAGTGCCAGCTCCTTTTCTCACCAAAACATACCAACTCGTCGACGACCCCGCCACAGATCACATAGTTTCTTGGGGTGAAGATGACACCACTTTCGTCGTTTGGCGTCCTCCTGAGTTTGCCAGGGACCTTCTTCCCAACTACTTCAAACACAACAACTTCTCCAGTTTCGTTCGCCAGCTCAACACCTATGGTTTCAGAAAGATTGTACCAGACCGATGGGAGTTCGCCAACGAATTCTTCAAGAAGGGAGAGAAACACCTGTTGTGCGAGATCCATAGAAGAAAAACTGCTCAGCCTCAACAAGGGAGCATGAATCACCATCACCACCATTCACATTCTCCACTCGGAGTCAACGTTAGCGTTCCTACTTTCTTTCCCTTTTCCAGCAGAGTCAGCATCTCTCCTTCCAAAGACTCCGACGACCAAACCAATTGGTGTGACTCTCCGCCACGTGGAGCCACCTCATTGATGAACGGTGCAGCCAACTACAGCACTTCCGTCACCGCGCTTTCCGAGGACAACGAGAGACTCAGGCGAAGCAACAACATGCTCATGTCGGAACTTGCGCACATGAAGAAGCTTTACAATGACATTATCTATTTCGTTCAGAACCATGTCAAGCCCGTTGCTCCAAGCAACTCTTACTCTTCTTCTTTGCTACTGTGTAATACACCCTCGGCTACTCCGATAAATGGGGGCAATGTTTCGATGATGCAAAGGCCAATGAACCAGTTTCTGGGGTATTATTCTAATAACCCTAAGCAAGGAACTACTCCAATAACTCAACATCAGCAACATCAACCTCAGACCTATGTTGTGAACTCCCCCACCAACACATCAAGGAGTTCTATAACGATTGTTGAAGGGCCTAGCGGTAACGTTAACAGCTGCAAGACAAAGCTTTTTGGCGTGTCGCTGCAGTCAAAGAAAAGGGTGCACCCCGATTATGGATCTAATTCGGAGACCAACAAGGCTCGTTTGGTTTTGGAAAAGGATGACTTGGGGTTGAATCTCATGCCTCCGTCCACTTGTTAG	1095	0.4776	MALLLDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQQGSMNHHHHHSHSPLGVNVSVPTFFPFSSRVSISPSKDSDDQTNWCDSPPRGATSLMNGAANYSTSVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNSYSSSLLLCNTPSATPINGGNVSMMQRPMNQFLGYYSNNPKQGTTPITQHQQHQPQTYVVNSPTNTSRSSITIVEGPSGNVNSCKTKLFGVSLQSKKRVHPDYGSNSETNKARLVLEKDDLGLNLMPPSTC*	365

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra5g1504	364	ProSitePatterns	HSF-type DNA-binding domain signature.	64	88	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vra5g1504	364	SMART	hsfneu3	21	114	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vra5g1504	364	PANTHER	BNAC06G00310D PROTEIN	290	363	-	-
	Vra5g1504	364	PANTHER	BNAC06G00310D PROTEIN	12	235	-	-
	Vra5g1504	364	Gene3D	-	17	116	IPR036388	-
	Vra5g1504	364	Pfam	HSF-type DNA-binding	25	114	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vra5g1504	364	SUPERFAMILY	"Winged helix" DNA-binding domain	22	114	IPR036390	-
	Vra5g1504	364	PRINTS	Heat shock factor (HSF) domain signature	25	48	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vra5g1504	364	PRINTS	Heat shock factor (HSF) domain signature	63	75	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vra5g1504	364	PRINTS	Heat shock factor (HSF) domain signature	76	88	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vra5g1504	364	Coils	Coil	187	207	-	-
	Vra5g1504	364	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	12	235	IPR027725	-
	Vra5g1504	364	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	290	363	IPR027725	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra5g1504	Vra-Chr5	21731014	21732682	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra5g1504	1	363	HSF	AT1G46264	55.729	6.66e-125	361

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Vra5g1504		HSF_DNA-bind	2.8e-32	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra5g1504	5	21731014	21732682	Vra5g1504	5	21731014	21732682	ECH
	Vra6g1855	6	35173243	35174677	Vra5g1504	5	21731014	21732682	PCT