Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1503 ATGCAAGGGCAGAGAGGTACAGTTGGTCCAATGCCAGAAACCTTAGAATTTGATTGTGGCTCTACGCCAGGTAATTCGACTGTGGATCAGCAGATTTGCTGGAATAATGTGAATCCTGCAGAAAATCAAATACCTGATTATATACTTTCTCCTGGTAATATGAACTCATCTTATGTGAATTCCATTGATCATGAATGGCAAAATTTGAGTGGATGGAGCTTAGGGGAGCCAAGTTCTAGCAGTACCCCAAATGAGATTAACAATAATGAGCCGAAACGAGAACTTGGATGGACATCAGCCATTACTGCTGGTGCGTTGCCTGGTGCAAGGCTAGAAGAAAGGCGCCTTGAACCAACCAATACACTTTCTCTAGACAATGATAACACAAGTCCTGTGTACATGCGCAGTCCTGAGTCTCGTTTAATGTCCCAGAATCTCAACCTAAATGCAGGTTTAGCGGATAGTGGCGATGATAATAGTCAACATCTGGAGCTTTCTGACTTACACATGTCTAGTGGGTCATCAAACGAGTGCTTGCCATCTAATGTTGGATCTGGTTCTTTTTTGCTTCCTTCTGCAAATAGTGGCTTCCTGGTCGAAGGTTCTGATGGTAGGCCAAGTTCTCTTGATACACGACGAGTCTCTTGTAAAAGAAAGGCTGTTGAAGGAAATAATGGACAATCTTCAGATGCTGGAAGTTCTAGCTACAATCAGCATGCTGATGGTAGTGTTTGGCATGCGATTCCTACTCAGGATAATGCTGGAAGCAGTTCAAACAGAGCTGTATCCACAGAGCAGGTGAATGCAAGACTTGGCCTGGGAATGGGGAATGAAGCATCTGAAAACGTTCCTGATTCAAACATTGCAGGAAGCTCAGAAAGCTTTCACAGGAATTTCCGGTTGAGGTTAAATCCTTTGAGTCAACAAAATTCCGTTCCTCCCGCTGCATTCTCAACTGCGAGCACGATTAGGCAGTCTGGTGTTTCTTCATCCTCTCAAGCATCACAAAGGTTTCATTCCGTTGATAATTCTCTGAACTTGAGATCAGCTCCACCAATAGATAACGTGGTTCCTCAAAGCCAGCCACTTGTAATCCATGTTCCTGCTTTGCCTAGGAATAGGCAATCGTTTAGATGGAATGGTGGTTCTAGCTCAAGAAATATCCATGCATCAAACCCAGTTATGTGTGCCGACAGAGACCAAGAAGATGCAAACTCAAGGCGAATGTCTAGAAATATTTTGGAACATCCCGTCTTTGTACCTGCAACTGATTTAAGAAATTTGGTTCAAAATCCAACAGTTAGAGCTTCAAGTTCAAGTAGTGAAAATTTAAGTATTCCAGGAAATGTCTCTTCATCACGGACTGGATCCAATCCAGCTACAAACCCCGCTCCTGCCTCAAATTGGGTATCTCGTCCTAATCCTCCACAACATCCACGGAGGCTATCTGAATATGTCCGTCGGTCCTTGTTTTCTCCTGGTTCTGATCCTATTGGAAATCCAAGCAATGCTTATTCTTCCTTGCGTACTGCTCTTTCAACCTCTGAACCAAGGCCATTATCATCTGGGACTGGGGCAAATCCAAGATCATCTCCATGGATGGATAGGCAAGGGGAAAGTGAATTTGGAATTCCTTATTCACTGCGTGCTCTGGATGTTGCAAGTGAAGGGAGTAGTAGATTTGTATCCGAGCTCCGGAATGTGTTGGGCATTATGCGTAGAGGTGGGAATGTGCGATTCGAGGATGTTGTGATCCTTGATCATCAGTCGTTTCTTTCTGGAATAGCTGATGTTCATGATCGACACAGAGATATGCGACTTGATGTTGATAACATGTCTTACGAGGAGTTATTGGCTCTGGAAGAGCGCATTGGAAATGTGAGTACTGGATTGAGTGAGGAAGCCGTATTGAAATTCTTGAAACAGAAAAAGCACTCGGTTGAAACAGAATCTCAGATTGATGCAGAACCCTGTTGTGTTTGTCAGGAAGATTATGGTGATGGAGATGATATCGGAACGCTTGACTGCGGCCATGATTTCCATAGTGACTGTATCAAACAGTGGCTAATGCATAAGAATCTGTGTCCTATTTGTAAGACAACAGGCTTGGCAACATGA 2118 0.4372 MQGQRGTVGPMPETLEFDCGSTPGNSTVDQQICWNNVNPAENQIPDYILSPGNMNSSYVNSIDHEWQNLSGWSLGEPSSSSTPNEINNNEPKRELGWTSAITAGALPGARLEERRLEPTNTLSLDNDNTSPVYMRSPESRLMSQNLNLNAGLADSGDDNSQHLELSDLHMSSGSSNECLPSNVGSGSFLLPSANSGFLVEGSDGRPSSLDTRRVSCKRKAVEGNNGQSSDAGSSSYNQHADGSVWHAIPTQDNAGSSSNRAVSTEQVNARLGLGMGNEASENVPDSNIAGSSESFHRNFRLRLNPLSQQNSVPPAAFSTASTIRQSGVSSSSQASQRFHSVDNSLNLRSAPPIDNVVPQSQPLVIHVPALPRNRQSFRWNGGSSSRNIHASNPVMCADRDQEDANSRRMSRNILEHPVFVPATDLRNLVQNPTVRASSSSSENLSIPGNVSSSRTGSNPATNPAPASNWVSRPNPPQHPRRLSEYVRRSLFSPGSDPIGNPSNAYSSLRTALSTSEPRPLSSGTGANPRSSPWMDRQGESEFGIPYSLRALDVASEGSSRFVSELRNVLGIMRRGGNVRFEDVVILDHQSFLSGIADVHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEEAVLKFLKQKKHSVETESQIDAEPCCVCQEDYGDGDDIGTLDCGHDFHSDCIKQWLMHKNLCPICKTTGLAT* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1503 705 MobiDBLite consensus disorder prediction 73 134 - -
Vra5g1503 705 MobiDBLite consensus disorder prediction 432 538 - -
Vra5g1503 705 MobiDBLite consensus disorder prediction 432 474 - -
Vra5g1503 705 MobiDBLite consensus disorder prediction 495 534 - -
Vra5g1503 705 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 704 - -
Vra5g1503 705 ProSiteProfiles Zinc finger RING-type profile. 658 699 IPR001841 -
Vra5g1503 705 SMART ring_2 658 698 IPR001841 -
Vra5g1503 705 MobiDBLite consensus disorder prediction 73 95 - -
Vra5g1503 705 MobiDBLite consensus disorder prediction 199 240 - -
Vra5g1503 705 CDD RING-H2_TTC3 657 699 - -
Vra5g1503 705 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 704 IPR045191 GO:0061630
Vra5g1503 705 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 621 702 IPR013083 -
Vra5g1503 705 MobiDBLite consensus disorder prediction 221 240 - -
Vra5g1503 705 Pfam Ring finger domain 658 699 IPR001841 -
Vra5g1503 705 SUPERFAMILY RING/U-box 645 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1503 Vra-Chr5 21705966 21712677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1503 1 705 C3H Transcription Factor Family AT2G15530 32.053 6.79e-77 259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1503 5 21705966 21712677 Vra5g1503 5 21705966 21712677 ECH
Vra6g1850 6 35116998 35122129 Vra5g1503 5 21705966 21712677 PCT