Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1488 ATGGGGACAAGTAGATCTTCCACGCTTACGATCCTCATCATTCTCTTCACCGTCTTCACAGTGTCTTCCGCGTTCGACATGTCCATAACCTCATACGACAGAACCACCTACGCCGACAAGACAGCCCGGAGGAGCGACAAGGAGGTGAGGACCATATACGAGGAGTGGCTTGTGAAGAATGGCAAGGTGCATACCACCCTCGACCAGAAAGAGAAGAGATTTCAGATTTTCAAAGACAACCTCAAGTTTATCGACGACCACAATGCTGAAAACCGGACATACAAGGTTGGCCTGAACCGGTTCGCCGATCTTAGCAACGATGAATACCGGTCCAAGTACCTGACAACCAAGATTAACCCCCTCAGGATGATGGCAAAGCCAAGTAACCGTTACGCTAGGCGCGTGGATGACAACTTGCCGGAATCTGTTGATTGGAGGAAAGAAGGTGCTGTGGTTAGAGTCAAAGACCAAGCAGAGTGCGATGGTTGCTGGGCATTCTCAGCAATTGCCGCAGTGGAAGGGATTAACAAGATAGTAACAGGCAATCTAACTGCATTATCAGAGCAAGAACTGTTGGACTGTGACAGAACAGTAAACGCAGGTTGTAGTGGCGGACTTGTGGATTATGCCTTTGAGTACATTATAAACAATGGTGGCATTGACACTGAAGATGATTACCCTTTCAAAGGCGCTGATGGTATATGCGATCAATATAAGCAAAATGCTAGAGCTGTTACAATTGATGGTTATGAACGTGTTCCTGCCTATGATGAGTTAGCCTTGAAAAAGGCAGTAGCAAATCAACCGGTGAGCGTTGCCATTGAAGCATATGGCAGAGAGTTTCAGTTATATGAATCTGGTATATTCACAGGAACATGTGGTACTTTAATCGATCATGGTGTTGCAGCTGTTGGTTACGATACAGAAAATGGAACTGACTATTGGATCGTGAAGAATTCATGGGGTGAGAAATGGGGAGAAGAAGGTTATGTAAGAATGGAACGCAATATAGCAGAAGACACTGCAGGGAAGTGCGGAATTGCGATTCTGTCATTCTATCCCATAAAGAGTGGCCAAAATCTCTCAAACCCTGTCAACCCACTGCGAATTTACATGTAG 1119 0.4567 MGTSRSSTLTILIILFTVFTVSSAFDMSITSYDRTTYADKTARRSDKEVRTIYEEWLVKNGKVHTTLDQKEKRFQIFKDNLKFIDDHNAENRTYKVGLNRFADLSNDEYRSKYLTTKINPLRMMAKPSNRYARRVDDNLPESVDWRKEGAVVRVKDQAECDGCWAFSAIAAVEGINKIVTGNLTALSEQELLDCDRTVNAGCSGGLVDYAFEYIINNGGIDTEDDYPFKGADGICDQYKQNARAVTIDGYERVPAYDELALKKAVANQPVSVAIEAYGREFQLYESGIFTGTCGTLIDHGVAAVGYDTENGTDYWIVKNSWGEKWGEEGYVRMERNIAEDTAGKCGIAILSFYPIKSGQNLSNPVNPLRIYM* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1488 372 PRINTS Papain cysteine protease (C1) family signature 157 172 IPR000668 GO:0006508|GO:0008234
Vra5g1488 372 PRINTS Papain cysteine protease (C1) family signature 299 309 IPR000668 GO:0006508|GO:0008234
Vra5g1488 372 PRINTS Papain cysteine protease (C1) family signature 314 320 IPR000668 GO:0006508|GO:0008234
Vra5g1488 372 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 34 362 - -
Vra5g1488 372 Pfam Papain family cysteine protease 139 355 IPR000668 GO:0006508|GO:0008234
Vra5g1488 372 SMART pept_c1 139 355 IPR000668 GO:0006508|GO:0008234
Vra5g1488 372 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 297 307 IPR025660 -
Vra5g1488 372 PANTHER CYSTEINE PROTEASE 34 362 - -
Vra5g1488 372 CDD Peptidase_C1A 140 354 IPR039417 -
Vra5g1488 372 Pfam Cathepsin propeptide inhibitor domain (I29) 53 109 IPR013201 -
Vra5g1488 372 SUPERFAMILY Cysteine proteinases 46 355 IPR038765 -
Vra5g1488 372 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 314 333 IPR025661 -
Vra5g1488 372 Gene3D Cysteine proteinases 22 357 - -
Vra5g1488 372 SMART Inhibitor_I29_2 53 109 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1488 Vra-Chr5 21541591 21544003 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1488 5 21541591 21544003 Vra5g1488 5 21541591 21544003 ECH
Vra6g1837 6 34919066 34923448 Vra5g1488 5 21541591 21544003 PCT