Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1484 ATGGCTAATCACCACCACCATCATCATCATGCTCACGACACCAACCTCAAATCCCTTCTCGACACCCTATACTGCTCCGAAGAGCATTGGGAGGAAGATGAATTAGACCAAGCAGAAGATGATTACCCAACGGCTAATAATGTTGTTAATAATAACGCTACCCTTCACTCCCCTCACGCGTTGTTGTTCGAAAGCGACATGTTTTGTGACGAACAGGAGTTGACATCGCTGCTGGGGAAAGAAAAACACAACCCTCTAACCACTTTCCTCCTAAGCAACCCTGCGCTGGAGTGTGCTCACAGGGAAGGCGTGGAGTGGATGCTCAGAGTGAACGCTCACTACTCCTTCTCTGCTCTCACAGCTCTTCTTGCCGTCAACTACTTTGACCGCTTCCTCTCCACCTTCCGCTTTCAGGATGGCAAGCCGTGGATGACACATCTCGCAGCCGTCGCTTGCCTCTCCCTCGCTGCCAAAGTGGAGGAGACACAAGTTCCCCTTCTCCTAGACCTTCAGGTGGAAGAGGGTAGATACTTGTTCGAAGCCAAAACGATTAAAAGGATGGAGATTTTGGTCCTTTCCACTCTTGGATGGAAGATGAACCCGCCAACCCCTCTCTCCTTTCTTGATTACATCACAAGAAGACTTGGATTGAAGGATAATCACTGCTGGGACTTCCTTAGGAAGTGCGAAGGCGTTCTTGTCTCTGTCCTCGGAGATTGGAGATTAATGGGTTATCTACCGTCAGAACTGGCAAGTGCGACGATGATACACGTAGTGAAAAGCGTGGAGCCTTGTCTAGAAGGCGAATACCAGAGACAACTCTTGGGTATTCTGGGATTCGACAAGGAGAAGGTGAATGAGTGTCGGAAAATGTTGGAATTGTGGTCAGGGTACGAGAAGCAGGGGAAAGAATGCATGAAACGGAAATTTGGAAGCGTTCCGGGAAGTCCAAACGGCGTGATGGAGATGTCGTTTAGCTGTGATAGCTCGAATGAGGCGTGGACAGTAGTTGCTGGTGCTTCGGTGTGTTGTTCGGCGGAAGGTTTATGGAAGAAGAGTAGAAGTGAAGTAAAGCGATAA 1080 0.4907 MANHHHHHHHAHDTNLKSLLDTLYCSEEHWEEDELDQAEDDYPTANNVVNNNATLHSPHALLFESDMFCDEQELTSLLGKEKHNPLTTFLLSNPALECAHREGVEWMLRVNAHYSFSALTALLAVNYFDRFLSTFRFQDGKPWMTHLAAVACLSLAAKVEETQVPLLLDLQVEEGRYLFEAKTIKRMEILVLSTLGWKMNPPTPLSFLDYITRRLGLKDNHCWDFLRKCEGVLVSVLGDWRLMGYLPSELASATMIHVVKSVEPCLEGEYQRQLLGILGFDKEKVNECRKMLELWSGYEKQGKECMKRKFGSVPGSPNGVMEMSFSCDSSNEAWTVVAGASVCCSAEGLWKKSRSEVKR* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1484 359 Gene3D - 102 200 - -
Vra5g1484 359 Pfam Cyclin, C-terminal domain 202 311 IPR004367 -
Vra5g1484 359 Pfam Cyclin, N-terminal domain 87 200 IPR006671 -
Vra5g1484 359 Gene3D - 201 290 - -
Vra5g1484 359 SUPERFAMILY Cyclin-like 72 200 IPR036915 -
Vra5g1484 359 SUPERFAMILY Cyclin-like 185 296 IPR036915 -
Vra5g1484 359 CDD CYCLIN 101 192 IPR013763 -
Vra5g1484 359 PANTHER CYCLINS 18 354 IPR039361 -
Vra5g1484 359 SMART cyclin_7 105 193 IPR013763 -
Vra5g1484 359 PANTHER CYCLIN D3.1 PROTEIN 18 354 - -
Vra5g1484 359 SMART Cyclin_C_2 202 329 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1484 Vra-Chr5 21508122 21510519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1484 19 292 Core Cell Cycle Gene Families AT4G34160 49.635 5.51e-88 268
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1484 5 21508122 21510519 Vra8g2458 8 42602049 42604247 ECH
Vra5g1484 5 21508122 21510519 Vra5g1484 5 21508122 21510519 ECH
Vra6g1832 6 34832201 34833987 Vra5g1484 5 21508122 21510519 PCT