Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra5g1481 | ATGGCTTCGGCGAAGGAAATGGATCGGATAAAAGGGCCATGGAGTCCCGAAGAAGACGAAGCCTTGCGGAAATTGGTTCAGACTTACGGGCCCAGAAACTGGTCCCTCGTAAGCAAATCCATTCCGGGTCGATCTGGGAAATCGTGCCGGTTGCGGTGGTGCAATCAGCTGTCTCCAGAGGTCCAGCGCCGGCCTTTTACGGCGGAGGAAGACGAAATGATCATGAAGGCGCACGCCAGGTTCGGGAACAAGTGGGCCACCATCGCTCGCCTCCTCAACGGCCGCACCGACAACTCCATCAAGAACCATTGGAATTCGACTCTAAAGAGGAAATGCTCCGAACCTCCCTCCGACCCTAGGCCTCCGAAAAGAGTCGCCACTGGTTCGGATAGCCCATCCGGATCCGATTTGAGCGATTCGGGTTTACCCGCTACGACTCCGATCCCACTTTACGAAGCTCTGGCAGGGAGCGTAAGCGTGAAGCTGGGTGCAACTGCGTCTTCTTCCGGAAATGATATCGCGACCTCATTGAGTCTGTCTCTACCAGGACCGAAGAATGGGCCGGGGGCTGGGCCTGTGATGAAGGAGAAGCCCAGGAATGGTGATTCGGAGCAGTTGTGGAGCAAAGAGTTGTTGAAGGTGATGCAAGATATGATACGAGTGGAAGTATGGAATTACATGTCTGGATTGGAACGTAGAGAGGTGTTTACCCAAACGGATGGCATTAGAAACTCGGAAAGGTCGAATACATTGAGGGAAAGAGGTTGA | 768 | 0.5378 | MASAKEMDRIKGPWSPEEDEALRKLVQTYGPRNWSLVSKSIPGRSGKSCRLRWCNQLSPEVQRRPFTAEEDEMIMKAHARFGNKWATIARLLNGRTDNSIKNHWNSTLKRKCSEPPSDPRPPKRVATGSDSPSGSDLSDSGLPATTPIPLYEALAGSVSVKLGATASSSGNDIATSLSLSLPGPKNGPGAGPVMKEKPRNGDSEQLWSKELLKVMQDMIRVEVWNYMSGLERREVFTQTDGIRNSERSNTLRERG* | 256 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra5g1481 | 255 | Pfam | Myb-like DNA-binding domain | 14 | 72 | - | - | |
| Vra5g1481 | 255 | ProSiteProfiles | Myb-like domain profile. | 58 | 108 | IPR001005 | - | |
| Vra5g1481 | 255 | SUPERFAMILY | Homeodomain-like | 8 | 104 | IPR009057 | - | |
| Vra5g1481 | 255 | CDD | SANT | 65 | 108 | IPR001005 | - | |
| Vra5g1481 | 255 | PANTHER | MYB PROTEIN-RELATED | 7 | 226 | - | - | |
| Vra5g1481 | 255 | MobiDBLite | consensus disorder prediction | 166 | 203 | - | - | |
| Vra5g1481 | 255 | SMART | sant | 10 | 59 | IPR001005 | - | |
| Vra5g1481 | 255 | SMART | sant | 62 | 110 | IPR001005 | - | |
| Vra5g1481 | 255 | MobiDBLite | consensus disorder prediction | 99 | 144 | - | - | |
| Vra5g1481 | 255 | MobiDBLite | consensus disorder prediction | 128 | 142 | - | - | |
| Vra5g1481 | 255 | PANTHER | TRANSCRIPTION FACTOR MYB44-LIKE | 7 | 226 | - | - | |
| Vra5g1481 | 255 | Gene3D | - | 64 | 127 | - | - | |
| Vra5g1481 | 255 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 6 | 61 | IPR017930 | - | |
| Vra5g1481 | 255 | MobiDBLite | consensus disorder prediction | 166 | 182 | - | - | |
| Vra5g1481 | 255 | CDD | SANT | 13 | 55 | IPR001005 | - | |
| Vra5g1481 | 255 | Gene3D | - | 10 | 62 | - | - | |
| Vra5g1481 | 255 | ProSiteProfiles | Myb-like domain profile. | 6 | 57 | IPR001005 | - | |
| Vra5g1481 | 255 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 62 | 112 | IPR017930 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vra5g1481 | Vra-Chr5 | 21480307 | 21481363 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vra5g1481 | 8 | 232 | MYB Transcription Factor Family | AT5G67300 | 49.117 | 7.91e-73 | 223 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB | Vra5g1481 | Myb_DNA-bind_6 | 4.5e-18 | CL0123 |
Event-related genes