Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1457 ATGGCTCTCCAAGCTCTTCAATCACCCACCGCCGCCACCCCATCGTTTACTCCCTTCCAAGAAGACACTCTCGCTTACTTAGACACGCCTTGGGCAAAGGGAAAGCGCTCTAAGCGTTCCCGGATGGACCAACACCCTTCCTGCACCGAGGAGGAGTATCTCGCTCTCTGTCTCATCATGCTCGCTCGCGGCGGCTCTCCTGCTCCCGCTCCCGCTCCCATCCCCTCCGCCGCAAAACCCGCTCTCTCCGACAACAACTCCGCGCCTCTCCCCGCCAAACTCAACTACAAATGCTCCGTCTGCAACAAGGCCTTCTCCTCTTACCAAGCCCTCGGCGGCCACAAGGCCAGCCACCGTAAGTTATCTGGCGCCGGCGAAGACCAGCCCACCTCCTCCAGCGTCACCACGACTTCTGCGTCCAACGGCGGAGGTAGGACCCACGAGTGCTCCATATGCCACAAAACATTCCCCACGGGACAGGCCTTGGGAGGACACAAACGTTGTCACTACGAAGGCGGCGGCGGCGGTGGTAACAGCGCTGTGACCGCCTCCGAAGGTGTGGGGTCCACTCACACAGGAAGCCACCGCGATTTCGATCTGAACCTGCCGGCTTTTCCGGACTTTCCAACGAGGTTCTCTGTGGATGAAGAGGTTTCCAGCCCCCACCCATCGAAGAAGCCCCGTCTCCATCTGAGCATCCCCAAGATTGAAATCCCTCGGTGCTGA 726 0.6006 MALQALQSPTAATPSFTPFQEDTLAYLDTPWAKGKRSKRSRMDQHPSCTEEEYLALCLIMLARGGSPAPAPAPIPSAAKPALSDNNSAPLPAKLNYKCSVCNKAFSSYQALGGHKASHRKLSGAGEDQPTSSSVTTTSASNGGGRTHECSICHKTFPTGQALGGHKRCHYEGGGGGGNSAVTASEGVGSTHTGSHRDFDLNLPAFPDFPTRFSVDEEVSSPHPSKKPRLHLSIPKIEIPRC* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1457 241 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 118 IPR013087 -
Vra5g1457 241 SMART c2h2final6 96 118 IPR013087 -
Vra5g1457 241 SMART c2h2final6 147 169 IPR013087 -
Vra5g1457 241 ProSiteProfiles Zinc finger C2H2 type domain profile. 147 169 IPR013087 -
Vra5g1457 241 SUPERFAMILY beta-beta-alpha zinc fingers 96 169 IPR036236 -
Vra5g1457 241 MobiDBLite consensus disorder prediction 124 145 - -
Vra5g1457 241 Pfam C2H2-type zinc finger 96 120 - -
Vra5g1457 241 Pfam C2H2-type zinc finger 147 170 - -
Vra5g1457 241 Gene3D Classic Zinc Finger 94 169 - -
Vra5g1457 241 PANTHER ZINC FINGER PROTEIN ZAT10 1 232 - -
Vra5g1457 241 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 232 IPR044653 GO:0003700
Vra5g1457 241 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Vra5g1457 241 MobiDBLite consensus disorder prediction 118 146 - -
Vra5g1457 241 ProSitePatterns Zinc finger C2H2 type domain signature. 149 169 IPR013087 -
Vra5g1457 241 MobiDBLite consensus disorder prediction 174 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1457 Vra-Chr5 21279074 21280338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1457 1 233 C2H2 Transcription Factor Family AT1G27730 51.037 8.48e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra5g1457 zf-C2H2_6 2.3e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1457 5 21279074 21280338 Vra5g1457 5 21279074 21280338 ECH
Vra6g1812 6 34597188 34598218 Vra5g1457 5 21279074 21280338 PCT