Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1453 ATGTTAACCACCGTCAACAACGACAACTCCTTCTCCGCTTTCAGCGACTGCAACAGTGACAGATCCGCCGAATTCTCCACACCGTCTTCCGAGACCCGCCGCCTCCTCATCGCATGCGCCGCCGACAATTCCGACGAATTCATTCCCCACCTCGTTCTCAACCTCCATTCCTGTTCCATTGAGGACCAGAAACAAGCCACCATGGAAATCAGGCTACTTGCCAAGAACAAGGAAGAGAACCGCGTCAAGATCGCAAAAGCCGGCGCGATTAAACCCTTGGTTTCGCTTCTATCGTCCTCGTCAGACCTTCAGCTTCAGGAGTACGTGGTGACCGCGATTCTCAATCTCTCGCTCTGCGACGAGAACAAAGACCTGATCAATTCCTCGGGAGCGGTGGAGCCTCTTGTGGTAGCGCTGGAGACGGGGACGCCGACGGCGAAGGAGAACGCGGCGTGCGCGCTGCTCCGGCTCTCCCGGAGAGAGGAGGACAAGGTTGCGATAGGGAGGGCGGGAGCGATTCCGCCTCTGGTGAAGCTTCTAGAAGGTGGGGGTTTGCGCGGGAAGAAGGACGCGGCGACGGCGCTGTACGCGGTGTGTTCGGCTAAGGAGAACAAAGTGAGGGCGGTGAGGGCGGGGGTTATGAGGGCGCTGGTGGAGCTGATGGCGGACTTGGGGTCGAGCATGGTGGACAAGGCGGTGTATGTGGTGAGCGTGGTTGTTGGGGTGGTGGAGGGGAGGGCGGCGCTGGTGGATGAAGGGGGGATTCCGGTGCTGGTGGAGATAGTGGAGGTGGGGACGCAGAGGCAGAAGGAGATCGCCGTCGGGGTTCTGTTGCAGATTTGTGAAGAGAGTTGGGTGTACCGTACTATGGTGGCCCGCGAAGGAGCCATTCCACCCCTCGTTGCTTTCTCACAATCACAGTCACACTCACACTCCAATCGCCCAAGACACAAGGCTGAGAAACTCATAGAGCTTCTACGGCAACCGAGATCCGGCAATGGCGCTGGTCGTTCCTAG 1017 0.587 MLTTVNNDNSFSAFSDCNSDRSAEFSTPSSETRRLLIACAADNSDEFIPHLVLNLHSCSIEDQKQATMEIRLLAKNKEENRVKIAKAGAIKPLVSLLSSSSDLQLQEYVVTAILNLSLCDENKDLINSSGAVEPLVVALETGTPTAKENAACALLRLSRREEDKVAIGRAGAIPPLVKLLEGGGLRGKKDAATALYAVCSAKENKVRAVRAGVMRALVELMADLGSSMVDKAVYVVSVVVGVVEGRAALVDEGGIPVLVEIVEVGTQRQKEIAVGVLLQICEESWVYRTMVAREGAIPPLVAFSQSQSHSHSNRPRHKAEKLIELLRQPRSGNGAGRS* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1453 338 Gene3D - 28 239 IPR011989 -
Vra5g1453 338 SMART arm_5 77 118 IPR000225 GO:0005515
Vra5g1453 338 SMART arm_5 242 282 IPR000225 GO:0005515
Vra5g1453 338 SMART arm_5 160 200 IPR000225 GO:0005515
Vra5g1453 338 SMART arm_5 201 241 IPR000225 GO:0005515
Vra5g1453 338 SMART arm_5 119 159 IPR000225 GO:0005515
Vra5g1453 338 PANTHER U BOX DOMAIN-CONTAINING 3 334 - -
Vra5g1453 338 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 88 131 IPR000225 GO:0005515
Vra5g1453 338 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 3 334 - -
Vra5g1453 338 SUPERFAMILY ARM repeat 44 309 IPR016024 -
Vra5g1453 338 Pfam Armadillo/beta-catenin-like repeat 78 117 IPR000225 GO:0005515
Vra5g1453 338 Pfam Armadillo/beta-catenin-like repeat 120 159 IPR000225 GO:0005515
Vra5g1453 338 Pfam Armadillo/beta-catenin-like repeat 162 195 IPR000225 GO:0005515
Vra5g1453 338 Gene3D - 240 326 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1453 Vra-Chr5 21249794 21251440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1453 26 337 U-box Gene Family AT2G23140 49.038 5.64e-80 254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1806 6 34506519 34508904 Vra5g1453 5 21249794 21251440 PCT