Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0795 ATGCCAAACCCAAAGCATCTTCTGCAGGGTACACTGTTCCTCTCGTTACTTCTTCAGGCGGTGTGCAAATCCACCATCGAGCCATGCTCCAACTCCGACTCATGCAACGCGCTTCTCGGATACACCCTTTACACTGACCTCAAAGTATCCGAAGTGGCCTCGCTTTTCCAAATCGACCCCATCGCGCTTCTCACTGCGAATGCCATCGACATCTCCTACCCCGACGTCGAGCATCACATCCTACCTTCCAAGCTCTTCCTCAAGATCCCCATCTCCTGCTCCTGCGTCGACGGCATTCGTAAGTCTGTCGCCACCAACTACAAGACGCGCCCCTCCGACACTCTATCCTCTATCGCCGACTCCGTCTACGGTGGCCTCGTCTCCTCCGACCAGCTGCGCGAGGCCAATTCCATTCCCGACCCCTCCGTCCTCGATGTGGGACAAAACCTAGTCGTGCCCCTCCCCTGCACCTGCTTTAACGGCTCCGACAACTCTCTCCCCGCCATTTACCTCTCTTACGTCGTTCGACCCGTTGATTCACTCGCTGCCATTGCTGCCAGGTACTTCACCACGCTTACAGATTTGATGAATGTCAATGCCATGGGAAGCACTGCCATTAATGATGGAGATATCCTTGCTGTTCCAATACCCGCCTGTGCTTCGAATTTTCCTAAATCCGCCTCTGATTTTGGTTTGCTTGTCCCTAATGGGAGCTATGCCATTACCGCGGGGCACTGTGTTCAGTGTAGCTGTGGACCGAGAAACTTGAATCTGTACTGTATGCCGGCTTCTCTAGCTGTTTCTTGCTCCAGCATGCAATGTAAAGGCAGCAACCTTATGCTTGGGAATGTTACAGTGCAGCAGACTAGTGGTGGTTGCAATGTTACTTCTTGCAATTATGATGGCATTGTTAATGGCACCATAGCAACAATGTTGTCCCCTTCTCTTCAGCCTCGATGTCCTGGTCCACAGGAATTTCCTCCTCTTGTTGCCCCACCTACCACCGTTGCAAAAGACACGGTGTTTGGACCAGCGCCAGCACCATTGTTCGATGGAGCAGGTCCTACGTCGTCTATATCCTCAGTGGTTCCTTCAACGGGGCTTCCAGGATTCTCTCCTGCAAATGGTCCTATTAGCGGCATTTCTTCTGGGGCTTCTGCTGCATGCTCCTTGGTGAAACCATTACCCACTTTGACGTATGCACTTGTGTTATTGCTTGTCAAGTTCATGATACCCGTGGCATTGTAA 1248 0.52 MPNPKHLLQGTLFLSLLLQAVCKSTIEPCSNSDSCNALLGYTLYTDLKVSEVASLFQIDPIALLTANAIDISYPDVEHHILPSKLFLKIPISCSCVDGIRKSVATNYKTRPSDTLSSIADSVYGGLVSSDQLREANSIPDPSVLDVGQNLVVPLPCTCFNGSDNSLPAIYLSYVVRPVDSLAAIAARYFTTLTDLMNVNAMGSTAINDGDILAVPIPACASNFPKSASDFGLLVPNGSYAITAGHCVQCSCGPRNLNLYCMPASLAVSCSSMQCKGSNLMLGNVTVQQTSGGCNVTSCNYDGIVNGTIATMLSPSLQPRCPGPQEFPPLVAPPTTVAKDTVFGPAPAPLFDGAGPTSSISSVVPSTGLPGFSPANGPISGISSGASAACSLVKPLPTLTYALVLLLVKFMIPVAL* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0795 415 CDD LysM 172 214 IPR018392 -
Vra5g0795 415 SUPERFAMILY LysM domain 171 216 IPR036779 -
Vra5g0795 415 Gene3D LysM domain 162 226 IPR036779 -
Vra5g0795 415 Gene3D LysM domain 99 159 IPR036779 -
Vra5g0795 415 ProSiteProfiles LysM domain profile. 171 214 IPR018392 -
Vra5g0795 415 ProSiteProfiles LysM domain profile. 105 152 IPR018392 -
Vra5g0795 415 CDD LysM 107 152 IPR018392 -
Vra5g0795 415 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 3 407 - -
Vra5g0795 415 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 3 3 407 - -
Vra5g0795 415 SUPERFAMILY LysM domain 106 154 IPR036779 -
Vra5g0795 415 Pfam LysM domain 107 153 IPR018392 -
Vra5g0795 415 Pfam LysM domain 173 215 IPR018392 -
Vra5g0795 415 SMART LysM_2 106 153 IPR018392 -
Vra5g0795 415 SMART LysM_2 172 215 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0795 Vra-Chr5 13568740 13571254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0795 3 390 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 70.229 0.0 552
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0795 - - gmx:100777292 728.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0795 5 13568740 13571254 Vra5g0795 5 13568740 13571254 ECH