Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0508 ATGGGGTTATCTTCTTTGCACGTCTGCATGGATTCATCAGATCATTGGTTGCAGGGCACAATTCACGAGGAGTCTGGAATGGATTCTTCTTCTTCACCCTCTGGGGATATGCTTACATGCTCAAGGCCCATGATAGAGAGGAGGCTAAGACCCCCACATGACCAAGCTCTAAAGTGCCCCAGGTGTGACTCAACCCACACCAAGTTCTGCTACTACAACAACTACAGTCTCTCTCAGCCAAGGTACTTCTGCAAGACCTGCAGAAGGTACTGGACCAAAGGAGGCACTCTTAGGAACATTCCTGTTGGTGGAGGCTGCAGAAAGAACAAGAAAGTCTCTGCAAAAAAATCCAATGACCACCCATTAGTTAACACTCAAATTAGTCAAACACAGCCCCCACCCTCCTCCTACCATCACAACCCCAAAGACCTTCAACTCTCTTTTCCAGACGTACAATTTTCCCACCTCAGCAACTTGCTTGGGACCAATGCAGGATCACTGGGAAACCCTAGCTTTATGGAGGCTAAGTATGGTATTGGCATGATCGAGAACCCTAGGCCAATTGACTTCATGATGGAGAGCAAGTTGGAGGGCATAATTGGGAGTGGTAGTTCTAGGAATTTTGATTTTTTTGGAAATAGTGACATGGGCATGGGTGCTGGGCTAGGAGATATGCATGCTAATGCTCAAAATGGGTTGCCACCAAATTTTCACGGTCTTTGCCCCTCAGCTTTTGGTGGCATTTCTATGTCCCTTGATGGCAACAACACTGCCAATGGTGCTAATAACTACTTAATGGACTCTTGCCAACGCTTGATGCTGCCATATGATGCCAATGAAGACCATAATGCCTCAATTGATGTGAAGCCAAACCCTAAACAGCTATTGTCCCTCGAATGGCAAGAGCAGGGTTGCTCTGATGCTGGCAAAGACTCCTTTGGGTATCTCAACGGTCCAGGATCATGGACTGGCATGATGAACGGCTATGGATCTTCCACCACAAACCCTTTGGTCTAA 1017 0.471 MGLSSLHVCMDSSDHWLQGTIHEESGMDSSSSPSGDMLTCSRPMIERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSAKKSNDHPLVNTQISQTQPPPSSYHHNPKDLQLSFPDVQFSHLSNLLGTNAGSLGNPSFMEAKYGIGMIENPRPIDFMMESKLEGIIGSGSSRNFDFFGNSDMGMGAGLGDMHANAQNGLPPNFHGLCPSAFGGISMSLDGNNTANGANNYLMDSCQRLMLPYDANEDHNASIDVKPNPKQLLSLEWQEQGCSDAGKDSFGYLNGPGSWTGMMNGYGSSTTNPLV* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0508 338 ProSitePatterns Zinc finger Dof-type signature. 59 95 IPR003851 GO:0003677|GO:0006355
Vra5g0508 338 PANTHER - 12 332 - -
Vra5g0508 338 ProSiteProfiles Zinc finger Dof-type profile. 57 111 IPR003851 GO:0003677|GO:0006355
Vra5g0508 338 MobiDBLite consensus disorder prediction 118 139 - -
Vra5g0508 338 Pfam Dof domain, zinc finger 54 111 IPR003851 GO:0003677|GO:0006355
Vra5g0508 338 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 12 332 IPR045174 GO:0003700|GO:0006355
Vra5g0508 338 MobiDBLite consensus disorder prediction 107 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0508 Vra-Chr5 6056282 6058050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0508 1 197 C2C2-Dof Transcription Factor Family AT5G62940 48.523 2.70e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vra5g0508 zf-Dof 1.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0508 - - gmx:778107 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1633 7 34792699 34795304 Vra5g0508 5 6056282 6058050 PCT