Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1330 ATGGCTTCTTGGTGGGATTTAAGACCCTTCTTTCGTTTTCAGTCTATTAGGACACGCTTTCAGGATTTCAGAACGAGGGAAGTTCAACTTGGTTCACATACTGTGAGCTCTCATGGATATGCAGTTGCGAGAACACACAAACATGATTGGCTCATTCTCCTGCTCCTCGTGTTGGTTGTTATCGGCCTATTAGTTGTCCAGCCGTTCCATCGCTTTGTTGGGAAGGATATGATGACTGATCTCAGATATCCCCTGAAGAGTAATACGGTTCCTGTTTGGTCCATTCCCATGTATGCAGTTTTATTGCCTATAGTGATCTTTCTTGTTGTCTACATCCGAAGGAGAGATGTCTATGACCTTCATCATGCTGTGCTGGGTCTATTGTTCTCTCTTTTAATAACAGCAGTAATTACTGAGGCAATAAAAAATGCAGTAGGTCGACCTCGACCAGACTTCTTCTGGCGATGTTTTCCAGATGGAAAGGATGTTTATGATAAATGGGGAGATGTCATCTGTCATGGTGAAAAAGAGGTCGTAAAGGAAGGATATAAGAGTTTCCCAAGCGGCCATACTTCATGGTCATTTTCTGGTCTGGGATTTTTATCACTGTACTTATCTGGGAAAATAAAAGCATTTGATCGCAGAGGTCATGTTGCAAAACTCTGCATTATTTTTCTGCCACTACTTTTTGCATCACTTGTTGGCATTTCTCGAGTCGATGACTACTGGCACCACTGGCAGGATGTGTTTGCGGGAGGCCTTTTAGGGCTTACAGTGTCTACATTTTGCTATTTGCAGTTTTTTCCGCCTCCTTATCATTCTGAAGGCTGGGGTCCTTATGCATACTTTAGGATGTTGGAAGAATCACGACAAATGACCCAAGTTCCTAATGTTCCAAATTCTGGTCATGCACAGTTAACAGAGGTTCAGGCTGAGAGTGAGGAGGGTCAAGAAGGTTGCCATGGGTATATGGGGCTATCTTTATCACNGGATCGTAATGCAACACTGAATGACATTGAATCTGGAAGAGGATAA 1035 0.43 MASWWDLRPFFRFQSIRTRFQDFRTREVQLGSHTVSSHGYAVARTHKHDWLILLLLVLVVIGLLVVQPFHRFVGKDMMTDLRYPLKSNTVPVWSIPMYAVLLPIVIFLVVYIRRRDVYDLHHAVLGLLFSLLITAVITEAIKNAVGRPRPDFFWRCFPDGKDVYDKWGDVICHGEKEVVKEGYKSFPSGHTSWSFSGLGFLSLYLSGKIKAFDRRGHVAKLCIIFLPLLFASLVGISRVDDYWHHWQDVFAGGLLGLTVSTFCYLQFFPPPYHSEGWGPYAYFRMLEESRQMTQVPNVPNSGHAQLTEVQAESEEGQEGCHGYMGLSLSXDRNATLNDIESGRG* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1330 344 Pfam PAP2 superfamily 124 268 IPR000326 -
Vra4g1330 344 CDD PAP2_containing_1_like 79 267 - -
Vra4g1330 344 SMART acid_phosph_2 122 264 IPR000326 -
Vra4g1330 344 PANTHER LIPID PHOSPHATE PHOSPHATASE 19 342 IPR043216 GO:0006644
Vra4g1330 344 Gene3D Phosphatidic acid phosphatase type 2/haloperoxidase 43 276 - -
Vra4g1330 344 PANTHER LIPID PHOSPHATE PHOSPHATASE 1 19 342 - -
Vra4g1330 344 SUPERFAMILY Acid phosphatase/Vanadium-dependent haloperoxidase 44 273 IPR036938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1330 Vra-Chr4 20056958 20061056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1330 26 344 Lipid Metabolism Gene Families AT3G02600 69.565 1.39e-169 473
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1330 4 20056958 20061056 Vra4g1330 4 20056958 20061056 ECH
Vra8g2516 8 43100065 43108080 Vra4g1330 4 20056958 20061056 ECH