Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1288 ATGGTCTTCCCGTCCCTTCCAATCTATCTAGATCCACCCAACTGGTCACAACAGCCTAATCAGCCAGCAGGAATTGCCACCCAGAATCCGCATATTCCGCTACCTTTGCAGCCGCCACCTTCATCGGTGACGGCTGCTATCGGAGGTGGTGGTGGTGGTGGTGGCGGGGGCGGTGGCTACCAGGGCTCAATTAGACCGGGATCAATGGCTGATAGAGCTAGAATGGCAAAGATACACCAACCTGATGCAGCACTCAAATGTCCGCGATGTGAATCTGCCAACACCAAGTTTTGCTACTACAACAACTATAGCCTTTCACAGCCCCGCCACTTTTGCAAGACTTGCCGTCGCTACTGGACCAGAGGAGGTGCACTCAGAAACGTGCCGGTTGGAGGTGGTTGCAGAAGGAACAAAAGAAGCAAAGGAAGCGGCGGTAGATCGAAGTCTCCCATGAAACCCTCAACAGGTTCTACCTCTGCAAGTGCTAATTCTTCTTCCAGTGGCTGCACCACTGATCATGTGATGATGACTCACTTGCCAACTCCGACACAAACTCAATTTCCATTCTTGACCTCCTTGCATCATTACAACAGTGACTACGTTTCTGGGGGCATTGGATCTCATTTTGGGACGATCACAACAACACCTTTGGTGGGTAGAAATAGCAGCGATGTTGAGTTTCAAATCGGTACTGGTTCAGCTTCATCACTTGGTAACAGTGGTGGAGCTATGTTGTCAAATGGCCTAAGTGAGCAATGGAGGTTGAACAATCTGCAACAAGTTCAGCAGCAGTTCCCTTTTTTGAGCACTAATCTAGAGCCGCAGATTGGGTTGTTTCAGTTTGGTGGTGGAGAAAATAACAATGCTGAACCGCCAAGTTATGCAAAGGAAGGTGGCCGGTTTAACATTCGCTCTAAAATAGATTCTATTTCTAGTCTGAGTGGGTTGATGCCTCAGGTTAACACGATAAAGATGGAAGAAAATCAAGGTTTGAATTTGCCAAAAAATCTCTTGATGGGAAATGATGCTCTTTGGAATGGAAGTGGCAATGCATGGAGTGAAGTTCCTTGTTTCACTCCTTCAAATAACCACTTGTTGTGA 1101 0.475 MVFPSLPIYLDPPNWSQQPNQPAGIATQNPHIPLPLQPPPSSVTAAIGGGGGGGGGGGGYQGSIRPGSMADRARMAKIHQPDAALKCPRCESANTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGSGGRSKSPMKPSTGSTSASANSSSSGCTTDHVMMTHLPTPTQTQFPFLTSLHHYNSDYVSGGIGSHFGTITTTPLVGRNSSDVEFQIGTGSASSLGNSGGAMLSNGLSEQWRLNNLQQVQQQFPFLSTNLEPQIGLFQFGGGENNNAEPPSYAKEGGRFNIRSKIDSISSLSGLMPQVNTIKMEENQGLNLPKNLLMGNDALWNGSGNAWSEVPCFTPSNNHLL* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1288 366 ProSitePatterns Zinc finger Dof-type signature. 87 123 IPR003851 GO:0003677|GO:0006355
Vra4g1288 366 Pfam Dof domain, zinc finger 83 139 IPR003851 GO:0003677|GO:0006355
Vra4g1288 366 MobiDBLite consensus disorder prediction 129 174 - -
Vra4g1288 366 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 9 363 IPR045174 GO:0003700|GO:0006355
Vra4g1288 366 MobiDBLite consensus disorder prediction 147 174 - -
Vra4g1288 366 ProSiteProfiles Zinc finger Dof-type profile. 85 139 IPR003851 GO:0003677|GO:0006355
Vra4g1288 366 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 9 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1288 Vra-Chr4 19743257 19745260 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1288 1 260 C2C2-Dof Transcription Factor Family AT2G37590 42.697 7.13e-48 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vra4g1288 zf-Dof 8.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1288 - - vun:114185583 564.303