Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1030 ATGTCGGAGCCAAAAGACCCCACGATCAAGCTCTTCGGGAAGACCATCCCCTTGTCGGAGATTCCGGCTGGATCCGACGGAGCTCCGGCTTCGTCTTCCGATGACCTTGTTGATGACAGTCTTGAACACAGCCATGCTTCTTCCTCCAACTCCTCCCGGGAGTCTCATACGCGAGAGGAAGGTCTTGTGGAGAAGGACTCAATGGGAGAAAAACCAGCTGATGATAAGAAGGAAGCCCCAACCCAATCATTAGAAGAGGTCAACAATCCAGATACCGTCTCTGGAACCTGTGAAGAATCCATTACTGAACCAACTGACAAGGAGACCACTACATTGAAAACCTCGAAAACTGAAGAAGAACTAAGCGAGACAAGTAAGTCACAGGATAACAACCTCAAAAAACCAGATAAAATACTTCCTTGTCCCCGCTGTAATAGTATGGATACCAAGTTCTGCTACTACAATAATTACAATGTCAACCAACCCCGTCACTTCTGCAAGAATTGCCAGAGATACTGGACTGCTGGGGGGACTATGAGGAATGTTCCTATAGGTGCTGGTCGCCGGAAGAACAAGAGCTCGTCTTCTCACTATCGCCAGATAACTGTTCCAGATGCTGCCCTCCAGAATCCTCCACTAGACTTGCCAAATGGAGCGTATCATCCTTCCTTGAAATGCAATGGGGCAGTCCTTACATTTGGATCTGATACACCCTTGTGTGAATCAATGGCATCCGTTTTGAACCTTGCTGATAAAACCGTGCACAACTATGCAAGAAATGGATTTTATAAAGCTGAAGAACTAAAAGTTCCAGTTCCACATGCCAGTGGAGAAAAAAGAGATGATCAATCCAGTAAATCTTCAGTTACCTCCACAAAGTCATTGGAAGGTGCAAGCACCAATGGAGCCCAAGAACAAGCTATGCCAAATTGTCATCGTTTCCCACCACAGGTTCCTTACTATACCGGTAACTCTTGGCCTATTCCATGGAATCCAGTGCAGTGGAGTTCTCCAGTATCACCTCCTACTTTTTGTCCCCCCGGATTCGCCATGCCACTCTATCCTGCTGCAGTTTATTGGGGTTGTGCTGTGTCTGGTGCATGGAACATCCCATGGGTAGCACAACCATCCTCACCGAAGGGTGCAACTTCAAACTCTGGCTCTAACTCACCAACCTTGGGTAAACATTCAAGGGAAGACAACATTCTGAAATCAAATGAATCTGGAGGTGGTGAGGATGGACACAATAAAGAAAACAACAAAGAGAAGTGCCTGTGGGTTCCAAAAACTCTAAGGATTGATGACTCTGGAGAAGCAGAAAAAAGCACTATATGGACAACACTGGGGATTAAAAATGACAAGGCTGACTCAGTCCCTAGGGAAACACTCTTTGAAGGCTTCCCTTCAAAGCTTGATGAGAAAAACCATTCAATCAAAGCCTCACCAGTATTGCAGGCCAATCCTGCAGCATTGTCAAGGTCACTTAAGTTTCATGAGACCTCATAG 1506 0.4608 MSEPKDPTIKLFGKTIPLSEIPAGSDGAPASSSDDLVDDSLEHSHASSSNSSRESHTREEGLVEKDSMGEKPADDKKEAPTQSLEEVNNPDTVSGTCEESITEPTDKETTTLKTSKTEEELSETSKSQDNNLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKSSSSHYRQITVPDAALQNPPLDLPNGAYHPSLKCNGAVLTFGSDTPLCESMASVLNLADKTVHNYARNGFYKAEELKVPVPHASGEKRDDQSSKSSVTSTKSLEGASTNGAQEQAMPNCHRFPPQVPYYTGNSWPIPWNPVQWSSPVSPPTFCPPGFAMPLYPAAVYWGCAVSGAWNIPWVAQPSSPKGATSNSGSNSPTLGKHSREDNILKSNESGGGEDGHNKENNKEKCLWVPKTLRIDDSGEAEKSTIWTTLGIKNDKADSVPRETLFEGFPSKLDEKNHSIKASPVLQANPAALSRSLKFHETS* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1030 501 MobiDBLite consensus disorder prediction 1 138 - -
Vra4g1030 501 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 500 - -
Vra4g1030 501 MobiDBLite consensus disorder prediction 376 421 - -
Vra4g1030 501 ProSiteProfiles Zinc finger Dof-type profile. 139 193 IPR003851 GO:0003677|GO:0006355
Vra4g1030 501 Pfam Dof domain, zinc finger 136 193 IPR003851 GO:0003677|GO:0006355
Vra4g1030 501 MobiDBLite consensus disorder prediction 101 133 - -
Vra4g1030 501 MobiDBLite consensus disorder prediction 376 396 - -
Vra4g1030 501 MobiDBLite consensus disorder prediction 397 421 - -
Vra4g1030 501 PANTHER CYCLIC DOF FACTOR 2 1 500 IPR045174 GO:0003700|GO:0006355
Vra4g1030 501 MobiDBLite consensus disorder prediction 287 307 - -
Vra4g1030 501 MobiDBLite consensus disorder prediction 83 100 - -
Vra4g1030 501 MobiDBLite consensus disorder prediction 274 311 - -
Vra4g1030 501 ProSitePatterns Zinc finger Dof-type signature. 141 177 IPR003851 GO:0003677|GO:0006355
Vra4g1030 501 MobiDBLite consensus disorder prediction 52 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1030 Vra-Chr4 17519854 17523229 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1030 6 501 C2C2-Dof Transcription Factor Family AT5G39660 43.931 3.87e-105 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vra4g1030 zf-Dof 2.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1030 - - gmx:100788247 774.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1030 4 17519854 17523229 Vra3g1062 3 10829353 10832615 ECH
Vra4g1030 4 17519854 17523229 Vra7g1898 7 38481871 38485071 ECH
Vra4g1030 4 17519854 17523229 Vra4g1030 4 17519854 17523229 ECH
Vra11g1240 11 14162089 14165559 Vra4g1030 4 17519854 17523229 ECH