Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0295 ATGGATCCTTCTAGTGAACAACCCCAGCAAATGTCTAGCCAGACAGTGGAGAAGAAACCAAGGCCTAATCCAGAAGAAGCTCTGAAATGCCCAAGATGCGATTCCACCAGCACAAAATTTTGCTACTACAACAACTATAGTCTTTCTCAGCCAAGATATTTCTGCAAGTCTTGCAGGAGATATTGGACCAAAGGAGGAACACTGAGGAATGTTCCAGTGGGAGGAGGATGCCGAAAGAAGCGATCATCATCATCATCATCATCGTTAAAGAGGGATCATCATGATCAGAGTTTCAAACCCAATCTTAACCCACTGACTACATTCCCTCAGCTGTGTTATGGCTCCAATGACTTCACTCTAGCATTAGCAAGACTTCAAAAACAATCATGTGGGCAATTGGGTTACAATGACAGCGAAATTTCTGCTCCGGGGAACCCCACAGGCTCGTTTTGTGACATTCTGAGCAATTCAGGCATGAATCCCTACTCAGACCACCCTTCATTTTTGGAAGCAATTCGAAGTGGGTTCCTTGAAACGCAAAGCCATCTTCAGAATTTGTATTACATGTACGGAAACGGGGACATTGGGGAGGTAGATAATGGCAATTCTGGTGGAGTTGGGATCAGTGAAGAGATGATGCTCCCTTATAATCAAGCGATGAGCAATGCAGCCAGTCAATCAGTGAGTGCATTACTGAAGCAAGAACAGTGTGGTGGCAGTGAGCAAAGTGAAAGGAAGCTGTTGGGGGGTTCGCCATGGCAGCTTAATGCAGACACAAACATCGGTGAAATTGATTCAGGAAGAGCAATTGAAAGTTGGAACAATTTCACATCTTCTTGGCATGGACTTCTCCAGAGTCCCCTAATGTAG 870 0.4494 MDPSSEQPQQMSSQTVEKKPRPNPEEALKCPRCDSTSTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKKRSSSSSSSLKRDHHDQSFKPNLNPLTTFPQLCYGSNDFTLALARLQKQSCGQLGYNDSEISAPGNPTGSFCDILSNSGMNPYSDHPSFLEAIRSGFLETQSHLQNLYYMYGNGDIGEVDNGNSGGVGISEEMMLPYNQAMSNAASQSVSALLKQEQCGGSEQSERKLLGGSPWQLNADTNIGEIDSGRAIESWNNFTSSWHGLLQSPLM* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0295 289 MobiDBLite consensus disorder prediction 1 30 - -
Vra4g0295 289 Pfam Dof domain, zinc finger 26 82 IPR003851 GO:0003677|GO:0006355
Vra4g0295 289 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 13 288 - -
Vra4g0295 289 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 13 288 IPR045174 GO:0003700|GO:0006355
Vra4g0295 289 MobiDBLite consensus disorder prediction 73 101 - -
Vra4g0295 289 ProSitePatterns Zinc finger Dof-type signature. 30 66 IPR003851 GO:0003677|GO:0006355
Vra4g0295 289 MobiDBLite consensus disorder prediction 1 18 - -
Vra4g0295 289 ProSiteProfiles Zinc finger Dof-type profile. 28 82 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0295 Vra-Chr4 5645714 5647463 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0295 26 289 C2C2-Dof Transcription Factor Family AT2G28510 40.876 3.43e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vra4g0295 zf-Dof 5.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0295 - - gmx:778104 444.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0295 4 5645714 5647463 Vra4g0295 4 5645714 5647463 ECH
Vra4g0295 4 5645714 5647463 Vra2g0673 2 5642192 5644587 PCT