Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0243 ATGGTTTTCTCTTCTATTCCAGTCTATTTAGATCCTCCCAATTGGCAGCAACAACAAAATCAACATCAGGCAAATGGCAGTAACAGTCCGCAGATGCTTCCCACCATGCCTCAACAGCCACAGGAACCTCACGTGGGAGTTCATGAACCTGCAGGCTCAATCCGGCCCGGTTTAATGGCGGATCGGTCTAAGATTCCGGCCCAGGAAGGAGCTCTCAAGTGTCCTCGCTGTGAATCCACCAACACAAAGTTTTGCTATTTCAACAACTACAGCCTCTCTCAGCCGCGCCACTTTTGCAAGACTTGTAGGCGTTATTGGACAAGAGGTGGCGCTCTCAGGAACGTTCCTGTCGGTGGAGGATGCCGTAGGAACAAGAAGAACAAAAGGAGTCGCTCCAAATCTCCGGTTCCTACTGAGAAATCATCACTTCCCAATCCCACAAGCGCTATGCCTGAGCTTATTGGTCGATTCCCACAACCTTTCATGGCCTCTCTTCAGAGTATGAACCGCTATGGTGCAGGGAACGCAGGTGTTAACTTGCGTGAGATGCAAGCTCAGAACGGTTCGCATATGGGGTTTCAAATTGGTGGTCAGGGTCATGGCTCAAGTGTTACTGCTGCTGGAGGAGGATTGGAACAGTGGCGGTTTCAGCAATTTCCTTTCTTGAATGGTTTTGACTCAGCTTCTGCTGTTTCTTCCTACCCTTTTCAAACTGAAAGTGTTGAAGGTCTGGTTGGAGATATTGCCGCAAGTTCTAGGGTTACTCAGCTGCCACCCCGAGTTAAATTGGAATACAACGGTGGTCTGAATTTGTCAAGATCTCCTTTGACTGTGTCAGAAAATGGTAACCATTACTACTCATGGACGGATTTATCCGGTCTTGCATCTTCTTCCGCTAGTCATCTCTTGTAA 912 0.4825 MVFSSIPVYLDPPNWQQQQNQHQANGSNSPQMLPTMPQQPQEPHVGVHEPAGSIRPGLMADRSKIPAQEGALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKRSRSKSPVPTEKSSLPNPTSAMPELIGRFPQPFMASLQSMNRYGAGNAGVNLREMQAQNGSHMGFQIGGQGHGSSVTAAGGGLEQWRFQQFPFLNGFDSASAVSSYPFQTESVEGLVGDIAASSRVTQLPPRVKLEYNGGLNLSRSPLTVSENGNHYYSWTDLSGLASSSASHLL* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0243 303 Pfam Dof domain, zinc finger 71 126 IPR003851 GO:0003677|GO:0006355
Vra4g0243 303 MobiDBLite consensus disorder prediction 113 153 - -
Vra4g0243 303 MobiDBLite consensus disorder prediction 12 35 - -
Vra4g0243 303 MobiDBLite consensus disorder prediction 12 51 - -
Vra4g0243 303 ProSiteProfiles Zinc finger Dof-type profile. 72 126 IPR003851 GO:0003677|GO:0006355
Vra4g0243 303 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 299 IPR045174 GO:0003700|GO:0006355
Vra4g0243 303 ProSitePatterns Zinc finger Dof-type signature. 74 110 IPR003851 GO:0003677|GO:0006355
Vra4g0243 303 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 5 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0243 Vra-Chr4 5112953 5114709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0243 8 222 C2C2-Dof Transcription Factor Family AT3G55370 41.079 2.57e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vra4g0243 zf-Dof 2.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0243 - - gmx:100775899 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0243 4 5112953 5114709 Vra2g0610 2 4815526 4817229 PCT