Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0056 ATGGTTTATACTTCCATCCCAGCATATATTGATCCAGCCAACTGGCAGCAACAGCAGCCAAATCATCAGCAGCAACCCAACAACACTGTTGTCAGCTCCCACCTTATTCTTCCACCACCAATACAACCGCCGCCGCCGCCTCCACCATCGCAACCCCATGGGCTCGGTGGTAGTGCCACTGCCGGCTCCATCAGGCCGGGTTCCATGGCGGATAGGGCCAGGATGGCCAATATACCCATGCAGGAAGCTCCACAGAAGTGTCCAAGATGTGAATCCACCAACACAAAGTTTTGCTACTTCAACAACTACAGCCTCTCTCAGCCCCGCCACTTCTGCAAGGCTTGCAGAAGGTACTGGACTCGTGGCGGGGCCTTGAGGAACGTCCCTGTTGGTGGAGGCTGCAGGAGGAACAAGAGGAGCAGAGGAAGCTCCGGCAGCAGCGCCAGGTCGCCTGCAAACTCGGATCGCCAAACGGCGAGTGCCGGCTCCGCTTCCACAACCAGTGGCTCCTCTTCTGCTGACATGGTGGCAGGCCTTGGCGGCACCGGAGTGCCATCGTCTCTTAGATTCATGGCTCCATTGCATCATCTTGGCGATCACCACCTCGGTGGTGGTGGTGGTGGTGGTGGAGGAGGAGAGATAGGATTAAACTATGGTTTGAACTATGGCTCGATTTCAGGTCCAATGGGAGGAATAGGGGAGTTGAATTTCCATATTGGAAACGCTTTGAATGGTGGTGGTGGTTCTGTGTTGTCTGGTTTGGACCAATGGAGGATGCCACAAACTCACCAATTTCCCTTCTTGTCTGGTTTGGAAGCTTCTTCATCACATGGGTTGTACCCATTTGATGGTGCTAGTGGTAGTGATGGCTATGGTGGCACTCCCATTAAGGTTTCGACTTCTGGGGTGATGTCTCAGTTTGCTTCTGTCAAAATGGAAGATAATCATCAGGAACTTGGTTTGCCTAGACAGTTCTTGGGAGTCAACAATAACCCTAATACAAATGAGCAATATTGGAGTGGTGCTGCTGGTGGTGCTGCTACTTCTGCTTGGACGGATCTTTCTGCTTTCAGCTCTTCTTCCACTACTAGTAATCCCCTATAG 1104 0.5226 MVYTSIPAYIDPANWQQQQPNHQQQPNNTVVSSHLILPPPIQPPPPPPPSQPHGLGGSATAGSIRPGSMADRARMANIPMQEAPQKCPRCESTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKRSRGSSGSSARSPANSDRQTASAGSASTTSGSSSADMVAGLGGTGVPSSLRFMAPLHHLGDHHLGGGGGGGGGGEIGLNYGLNYGSISGPMGGIGELNFHIGNALNGGGGSVLSGLDQWRMPQTHQFPFLSGLEASSSHGLYPFDGASGSDGYGGTPIKVSTSGVMSQFASVKMEDNHQELGLPRQFLGVNNNPNTNEQYWSGAAGGAATSAWTDLSAFSSSSTTSNPL* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0056 367 MobiDBLite consensus disorder prediction 139 175 - -
Vra4g0056 367 ProSitePatterns Zinc finger Dof-type signature. 87 123 IPR003851 GO:0003677|GO:0006355
Vra4g0056 367 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 5 363 - -
Vra4g0056 367 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 363 IPR045174 GO:0003700|GO:0006355
Vra4g0056 367 Pfam Dof domain, zinc finger 84 139 IPR003851 GO:0003677|GO:0006355
Vra4g0056 367 ProSiteProfiles Zinc finger Dof-type profile. 85 139 IPR003851 GO:0003677|GO:0006355
Vra4g0056 367 MobiDBLite consensus disorder prediction 37 53 - -
Vra4g0056 367 MobiDBLite consensus disorder prediction 129 178 - -
Vra4g0056 367 MobiDBLite consensus disorder prediction 33 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0056 Vra-Chr4 1775169 1776982 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0056 1 360 C2C2-Dof Transcription Factor Family AT2G37590 40.476 1.29e-61 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vra4g0056 zf-Dof 4.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0056 - - gmx:100796820 516.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0056 4 1775169 1776982 Vra4g0056 4 1775169 1776982 ECH