Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1062 ATGCTCGAAAATAAGGACCCTGCAATTAGGCTCTTCGGCCAGAAGATTGCCTTTTCCGGAGAACCCGAAGCTCCGACCATTGCCGCCGCTCACACCCCCTCGCCACCGCCGCCGGTGGATGTTGTCAGAGACGCAGAAGAAGAAGGAGAAGAAGAAGTAGTAGATGACGACGTTGCTGACTCAGAGGCTGAAGATGATGACAACAGAGATAAGGATCCTGCAGAAGAAGTTAGTGAGAAAACGAAAGAAGCTGATCTTCCTCCAAATGCTGCAGACTCTAAGAACACCGCAGAGGGTCTTCAGAATCCAAACACACCTTCCATAGACGAAGAATCTGCAAAGTCAAAATCCAACAAGTCAGAAAACGATCAAACCGATCCAACCACAACTGGTGCTGCTACTGCAACCAACAACTCACAAGACAACAACAATAAAACGCTGAAAAAACCAGACAAAATTCTTCCTTGTCCTCGCTGCAATAGCATGGACACCAAGTTCTGTTACTACAACAACTACAATGTGAACCAGCCACGTTACTTCTGCAAAGCGTGCCAAAGGTACTGGACCGCCGGGGGCACCATGCGAAACGTGCCGGTGGGTGCAGGGAGGAGAAAGAACAAAAACTCAGCCTCTCACTATCGCCATATCACAATCTCTGAAGCACTTCAAGCTGCAAGAATCGATTCCCCAAACGGGACTCATCTTTTGAAGCCCAATGGTAGAGTCCTCAGCTTTGGTTTAGACCCTCCAATTTGTGATTCCATGGCATCAGTCCTGAACCTCGCAGAGAAGAAAAAAAGAAACGGGTTTCACTCCATGGAGGATCAGAGAAACAAAGATGATGACTGCTCCAGTGCATCATCCATCACCGTTTCCAATGAAGAAAGTGGGAAAAGCACGTCACAAGAATCATTGGTGCCTAACAACAACAGTTTCATACATCATCATCATCACCATGTTCCATGCATCTCCACTGTTCCTTGGGCTTATCCTTGGAACTCCGGGGTTCCCTCAGCACCTGCTCTGTGCCCTCCAGGGTTTCCCATGTCGTTTTACCCTCATGCATTTTGGAACATTCCATGGTTTCCCACACACCATGCTGCCCCAGCTCCAAGGTCTCCGGGTTCTGGTCCAAATTCTCCCACTCTCGGGAAACACTCCAGGGACGATGACTCGGCGAAGCAAGAGCACGTCTATGAGGAACCCTCGAGGCAGAGAAACGGGTCTGTTTTGGTGCCGAAAACTTTGAGAATCGATGACCCCAGTGAGGCAGCCAAGAGTTCAATATGGGCAACTTTAGGGATCAAGAACGAGTGTGTGAGTGGGGGTGGCATGTTCAAAGGGTTCCAATCAAAGAAAGAAGAGAAAGAAGGTGTCATGGAAACCTCTCCTGTGTTGAGGGCCAACCCTGCAGCCTTGTCTAGATCCCTTAACTTTCACGAGAACTCTTGA 1452 0.489 MLENKDPAIRLFGQKIAFSGEPEAPTIAAAHTPSPPPPVDVVRDAEEEGEEEVVDDDVADSEAEDDDNRDKDPAEEVSEKTKEADLPPNAADSKNTAEGLQNPNTPSIDEESAKSKSNKSENDQTDPTTTGAATATNNSQDNNNKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHITISEALQAARIDSPNGTHLLKPNGRVLSFGLDPPICDSMASVLNLAEKKKRNGFHSMEDQRNKDDDCSSASSITVSNEESGKSTSQESLVPNNNSFIHHHHHHVPCISTVPWAYPWNSGVPSAPALCPPGFPMSFYPHAFWNIPWFPTHHAAPAPRSPGSGPNSPTLGKHSRDDDSAKQEHVYEEPSRQRNGSVLVPKTLRIDDPSEAAKSSIWATLGIKNECVSGGGMFKGFQSKKEEKEGVMETSPVLRANPAALSRSLNFHENS* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1062 483 MobiDBLite consensus disorder prediction 122 144 - -
Vra3g1062 483 MobiDBLite consensus disorder prediction 283 310 - -
Vra3g1062 483 MobiDBLite consensus disorder prediction 368 415 - -
Vra3g1062 483 MobiDBLite consensus disorder prediction 94 111 - -
Vra3g1062 483 MobiDBLite consensus disorder prediction 20 154 - -
Vra3g1062 483 MobiDBLite consensus disorder prediction 44 72 - -
Vra3g1062 483 MobiDBLite consensus disorder prediction 73 87 - -
Vra3g1062 483 ProSitePatterns Zinc finger Dof-type signature. 156 192 IPR003851 GO:0003677|GO:0006355
Vra3g1062 483 PANTHER CYCLIC DOF FACTOR 2 1 482 IPR045174 GO:0003700|GO:0006355
Vra3g1062 483 MobiDBLite consensus disorder prediction 270 310 - -
Vra3g1062 483 PANTHER CYCLIC DOF FACTOR 1 1 482 - -
Vra3g1062 483 Pfam Dof domain, zinc finger 151 208 IPR003851 GO:0003677|GO:0006355
Vra3g1062 483 MobiDBLite consensus disorder prediction 384 403 - -
Vra3g1062 483 ProSiteProfiles Zinc finger Dof-type profile. 154 208 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1062 Vra-Chr3 10829353 10832615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1062 1 481 C2C2-Dof Transcription Factor Family AT3G47500 46.894 1.64e-123 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vra3g1062 zf-Dof 2.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1062 - - gsj:114409713 680.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1062 3 10829353 10832615 Vra7g1898 7 38481871 38485071 ECH
Vra4g1030 4 17519854 17523229 Vra3g1062 3 10829353 10832615 ECH
Vra11g1240 11 14162089 14165559 Vra3g1062 3 10829353 10832615 ECH
Vra3g1062 3 10829353 10832615 Vra3g1062 3 10829353 10832615 ECH