Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0609 ATGGAGAGAGGGTGGAAGGCTAACAGTGTTGAGATTTCACCAAATTGTCCCAGGTGTGGTTCTTCCAACACCAAGTTCTGCTATTACAATAACTACAGTTCAACTCAACCACGGTACTTTTGCAAGGGCTGCAGAAGGTACTGGACCAAAGGAGGATCCCTCCGCAACGTACCAATTGGTGGTGGCTGCCGGAAAAGTAGAAGGGGTAAATATAATAAGGCCCTAAGACACGTCCATGGCCCAGTTGGGCATTCTGATGATTTAAGGCCTTCATCTTCAGTGGTGTCTGATGGGCCAAATATTGATCTTGCGCAAGTCTATGCAAGTTTTCTCAATGTGAAGCCAGATCAAGTGCAAACAGTTTGCTCTCCTTCTCCTGAGTATTCCAGCATAGTTAACACTGATTTTGGACACAGTGCTTTGTCTGAAGAGCACCATGGCCTTACTGGGCGTTTGCATTTTCATGAACAGCCCAGAGAATCCCATTTTGGTGAGGATATCGAAATGTACTTTTGCGGGTTGAACTCTATCCAGAAGCATCAGGAGTGTAGTAGCAGTCATGATACAACAGTTACAAAAACAAATTTTGAGTTGCCTCCATTACCAGGTGAAGTTGCAGAAACCTCACATGGTAATGTGTTGTGGTCCAATTCTGAGATGATGGTAGATCATGCTTTGCAAGCCACACAATGGCCCCTTCTTGGACCAGAAGCTTATGATGCAGACTTCTTAATGGGTAACTGTTGGAGCCACTTCGATTTGCCAAGGGATGCTTCTTTTTCCATGCCTTGA 792 0.4508 MERGWKANSVEISPNCPRCGSSNTKFCYYNNYSSTQPRYFCKGCRRYWTKGGSLRNVPIGGGCRKSRRGKYNKALRHVHGPVGHSDDLRPSSSVVSDGPNIDLAQVYASFLNVKPDQVQTVCSPSPEYSSIVNTDFGHSALSEEHHGLTGRLHFHEQPRESHFGEDIEMYFCGLNSIQKHQECSSSHDTTVTKTNFELPPLPGEVAETSHGNVLWSNSEMMVDHALQATQWPLLGPEAYDADFLMGNCWSHFDLPRDASFSMP* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0609 263 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 1 259 - -
Vra3g0609 263 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 259 IPR045174 GO:0003700|GO:0006355
Vra3g0609 263 ProSitePatterns Zinc finger Dof-type signature. 16 52 IPR003851 GO:0003677|GO:0006355
Vra3g0609 263 Pfam Dof domain, zinc finger 15 68 IPR003851 GO:0003677|GO:0006355
Vra3g0609 263 ProSiteProfiles Zinc finger Dof-type profile. 14 68 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0609 Vra-Chr3 6674350 6675359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0609 5 258 C2C2-Dof Transcription Factor Family AT3G52440 39.560 2.34e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vra3g0609 zf-Dof 1.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0609 - - gmx:778109 399.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0609 3 6674350 6675359 Vra3g0609 3 6674350 6675359 ECH
Vra3g0609 3 6674350 6675359 Vra8g0142 8 1607120 1608902 PCT