Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1692 ATGGGAAAGAAGAACAAAGTGAAGGAGAATGGAGGCAAAGAGCACTGCCCCTCTACACTTTTTGTCTCCAACTTACCCTATTCCTTTTCCAATTCTCAGTTGGAGGAGACGTTCAGTGAGATTGGACCTGTGAGGCGTTGCTTTATGGTCACACAGAAAGGGTCAGCGCAGCATCGTGGTTTCGGTTATGTCCAATTTGCTGTTGAGGAAGATGCCAATCGTGCTATTGAGCTGAAGAATGGTATGTCTGTTGAAGGCCGTAAAATTGGAGTGAAGCATGCAATGCCTCGTCCAACTCGTGAGAAACGAAATTCAAAACCAAATAAAGCTGGAACACCAGATGATCTTGTGAAACCAAAAGGTGATGATGTAAACGACAGTAAATCATCTGGAACAGAGAAGCATGTTTCAGTTTTGAAGGAAGAAGTACAAGTCACAAGTAAACAAAAAAAAAAGAACCCAATGGAAACGAAAAAATCAGCTCTTTGTAATGATGTCGCAGATGATGGTGGTTGCTCAGAAAAACAGAGGGTTTCTAGAACTGTTATATTTGGTGGCCTCAAGGATTCTGATATGGCTGAAGAAGTTCACAGCCAAGCCAGAGAGATTGGCACTGTGTGTTCCATTAACTACCCTCTTTCAAGAAAAGATCTTGAGAAACATGGTCTCATGCAAGATGGCTGTACCATGGATGCCTCGTCTATACTTTATACAAGTGTAAAATCAGCTCGACTTTCTGTTGCAATGTTGCACAAAAAAGTGATAAGAGGAGAAACAATTTGGGCCCGCCAATTGGGTGGAGAGGGCTCCAAGACTCAGAAATGGAAGCTTATTGTCAGAAACCTTCCTTTCAAGGCAAAAGATACTGAAATAAGCGATATGTTTTCATCTGCTGGATATGTGTGGGACGTATTTATTCCACAAAAGTCAGACACAGGTCTGTCTAAGGGCTTTGCATTTGTAAAATTCACCTGCAAGCAAGATGCAGAAAATGCCATTCAAAAGCTGAATGGGTCGAAGTTTGCAAAACGAGTCATAGCTGTTGATTGGGCTGTTCCAAAGAAGATATTTAGTAGTGATATGAATGATACTCGTGCTTCAGAGAAAGAAGAAGTCTTGAGTGATGAAGATAGTGATGAGGAGGATGTGGAGCTTGTTGATAAAAGATCTGGCCAAGGAGATGATAATGATACAAACCACTCTAGTGCCATGGTGGAAGAGGGAGCTCCTCCTGAAGATAATTTTGATAAGGAGGCAGACGTTGCAAGAAAGGTTCTTAACAACTTGCTTGGATCCTCAAGCAAAGGAACATCTGAGAACAATGATTCTATTTTGTCCAAAGAAAACAAAGAGTCAAGACCTGATGAAGTTGTTAAGGATGCGGATGGAAAAGTATCTGATGACATGGAAAAGGTTTCAGGTGCTTCTAAGCCTGACATTTCCAGCATAAACAATTTATCTAGTCCTAAGGGAACAGAAGAAGATTTGCAGAGAACAGTTTTTATAAGTAATCTTCCCTTTGAATGTGATAATGAAGAAGTAAAACAACGATTTGCTGGGTTTGGAGAAGTAGAATACTTTGCTCCTGTTCTTCACCAAGTTACCAAGCGACCAAGAGGAACCGGTTTTCTAAAGTTTAAAACTGTAGAAGCAGCTAATGCTGCAATTTCAGCTGCTATTGCTGCTTCCGGGACAGGTATTTTGCTGAAGGGTAGACTGTTGAAAGTTTTAAAGGCTTTGGATAAGAAATCAGCACATGACAAGGAACTGGAGAAAGCAAAAAATGAGGTTAATGACCACCGGAATCTTTACTTGGCAAAGGAGGGACTTATTCTTGAGGGAACTACAGCTGCTGAAGGGGTTTCAGCCAGTGATATGTTAAAACGCCAAGAGTTGGAGAGAAAAAAGAAGACAAAGCTTCAATCTCCAAATTTTCATGTTTCAAGAACTAGACTCATTATCTACAACTTACCCAAGTCAATGAATGAGAAAGAACTCAAGAAGCTTTGCATTGATGCAGTCATCTCCAGAGCTACCAAGCAAAAACCTGTAATTCGGCAGATAAAGTTTTTGAAAAATGATAAGAACGGAAAGGTAGCTCAAGAACGCTATTCACGGGGAGTTGCCTTTGTTGAATTTTCTGAGCATCAGCATGCCCTTGTGGCTCTGAGAGTTCTCAACAATAATCCTGAAACATTTGGTGCTGAACATCGACCAATCGTGGAGTTTGCTCTTGATAATGTTCAAACACTTAAACTTCGGAAGGCAAAGCTGCAATTTCAGCAGCAGGCTCCTCAAGATGACAACAATGACATGGAAAATGACAAACCTGGCAAGAAAGAAGATCACAGAGAGGACAGAAAACGAAAGTCTAGAGAGCATGGTGAACCGACAAAGGAAGCAGTAGTGAATTCAAATGGTGAATCAGGTGATACACTGGCAAATGGAAAATCCAAAAGACAGAAAGGCAACAAAAAGAGCAAAAGGGCACTGAAAGAAAATCCAGAAGCCTTGTCCATGAAGCCAAAGAATAACCAAAATGGCCAGAAAAATGGTGGTGCATCAGTTGAAGATCAAAACACTGCTGCTTCCACTAACAGAAGAAAATCAGGAAAGAAAGATGATGATACTGGGTTTAGAAAAAGAAAGATGCAGAATCAAGAACAAGAAGCAGGGCATAAGGTGGTTTCTAAGAAACGGCCTAAGAAGAATAAAGATTCAGTAGGGAAGGACGTAGTAGACAAGCTTGACATGCTAATAGAACAATATAGATCCAAGTTCTCACACAAAGGTTCCCAAGATAATGGAGAGAAAAAGCCTTCAAAACAGCTTAGGAAATGGTTCCAATCATAG 2853 0.4073 MGKKNKVKENGGKEHCPSTLFVSNLPYSFSNSQLEETFSEIGPVRRCFMVTQKGSAQHRGFGYVQFAVEEDANRAIELKNGMSVEGRKIGVKHAMPRPTREKRNSKPNKAGTPDDLVKPKGDDVNDSKSSGTEKHVSVLKEEVQVTSKQKKKNPMETKKSALCNDVADDGGCSEKQRVSRTVIFGGLKDSDMAEEVHSQAREIGTVCSINYPLSRKDLEKHGLMQDGCTMDASSILYTSVKSARLSVAMLHKKVIRGETIWARQLGGEGSKTQKWKLIVRNLPFKAKDTEISDMFSSAGYVWDVFIPQKSDTGLSKGFAFVKFTCKQDAENAIQKLNGSKFAKRVIAVDWAVPKKIFSSDMNDTRASEKEEVLSDEDSDEEDVELVDKRSGQGDDNDTNHSSAMVEEGAPPEDNFDKEADVARKVLNNLLGSSSKGTSENNDSILSKENKESRPDEVVKDADGKVSDDMEKVSGASKPDISSINNLSSPKGTEEDLQRTVFISNLPFECDNEEVKQRFAGFGEVEYFAPVLHQVTKRPRGTGFLKFKTVEAANAAISAAIAASGTGILLKGRLLKVLKALDKKSAHDKELEKAKNEVNDHRNLYLAKEGLILEGTTAAEGVSASDMLKRQELERKKKTKLQSPNFHVSRTRLIIYNLPKSMNEKELKKLCIDAVISRATKQKPVIRQIKFLKNDKNGKVAQERYSRGVAFVEFSEHQHALVALRVLNNNPETFGAEHRPIVEFALDNVQTLKLRKAKLQFQQQAPQDDNNDMENDKPGKKEDHREDRKRKSREHGEPTKEAVVNSNGESGDTLANGKSKRQKGNKKSKRALKENPEALSMKPKNNQNGQKNGGASVEDQNTAASTNRRKSGKKDDDTGFRKRKMQNQEQEAGHKVVSKKRPKKNKDSVGKDVVDKLDMLIEQYRSKFSHKGSQDNGEKKPSKQLRKWFQS* 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1692 950 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
Vra2g1692 950 MobiDBLite consensus disorder prediction 428 443 - -
Vra2g1692 950 PANTHER RNA BINDING PROTEIN 7 360 - -
Vra2g1692 950 PANTHER RNA BINDING PROTEIN 443 766 - -
Vra2g1692 950 MobiDBLite consensus disorder prediction 759 950 - -
Vra2g1692 950 MobiDBLite consensus disorder prediction 444 474 - -
Vra2g1692 950 CDD RRM2_RBM28_like 276 352 - -
Vra2g1692 950 SMART rrm1_1 19 92 IPR000504 GO:0003723
Vra2g1692 950 SMART rrm1_1 499 577 IPR000504 GO:0003723
Vra2g1692 950 SMART rrm1_1 651 742 IPR000504 GO:0003723
Vra2g1692 950 SMART rrm1_1 276 349 IPR000504 GO:0003723
Vra2g1692 950 Coils Coil 576 603 - -
Vra2g1692 950 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 650 763 IPR000504 GO:0003723
Vra2g1692 950 MobiDBLite consensus disorder prediction 477 491 - -
Vra2g1692 950 Gene3D - 262 398 IPR012677 -
Vra2g1692 950 SUPERFAMILY RNA-binding domain, RBD 271 357 IPR035979 GO:0003676
Vra2g1692 950 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 275 353 IPR000504 GO:0003723
Vra2g1692 950 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 498 581 IPR000504 GO:0003723
Vra2g1692 950 MobiDBLite consensus disorder prediction 839 866 - -
Vra2g1692 950 Gene3D - 486 589 IPR012677 -
Vra2g1692 950 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 500 558 IPR000504 GO:0003723
Vra2g1692 950 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 277 346 IPR000504 GO:0003723
Vra2g1692 950 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 89 IPR000504 GO:0003723
Vra2g1692 950 MobiDBLite consensus disorder prediction 90 158 - -
Vra2g1692 950 Gene3D - 649 744 IPR012677 -
Vra2g1692 950 CDD RRM4_RBM28_like 650 747 - -
Vra2g1692 950 SUPERFAMILY RNA-binding domain, RBD 18 261 IPR035979 GO:0003676
Vra2g1692 950 MobiDBLite consensus disorder prediction 802 817 - -
Vra2g1692 950 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 7 360 - -
Vra2g1692 950 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 443 766 - -
Vra2g1692 950 MobiDBLite consensus disorder prediction 902 944 - -
Vra2g1692 950 SUPERFAMILY RNA-binding domain, RBD 498 728 IPR035979 GO:0003676
Vra2g1692 950 MobiDBLite consensus disorder prediction 867 895 - -
Vra2g1692 950 CDD RRM3_RBM28_like 498 579 - -
Vra2g1692 950 Gene3D - 2 110 IPR012677 -
Vra2g1692 950 MobiDBLite consensus disorder prediction 361 415 - -
Vra2g1692 950 MobiDBLite consensus disorder prediction 428 491 - -
Vra2g1692 950 MobiDBLite consensus disorder prediction 87 158 - -
Vra2g1692 950 MobiDBLite consensus disorder prediction 769 799 - -
Vra2g1692 950 CDD RRM1_RBM28_like 19 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1692 Vra-Chr2 25210126 25218579 Dispersed/Transposed