Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1689 ATGGGGGACGATGGAAAGAAGAACGGCGGAGAGGGGGAGTTGGTGAAGGTGGAGCCAAAACCCAGCAATGGCTTCACCTCAAAAGTGATTGATTTGTTGGAGAAGCTGGTGGTGAAGTTTTTGTATGACACTTCACTGCCCCATCACTACCTCACTGGTAATTTTGCTCCTGTCACTGAGACCCCTCCCATAAAGGACCTTCCTGTCAAAGGACACCTCCCGGATTGCTTGAATGGGGAGTTTGTCAGAGTTGGACCTAATCCAAAGTTTTCTCCTGTTGCCGGATATCACTGGTTTGATGGAGATGGAATGATTCATGGTTTGCGCATCAAAGATGGAAAAGCTACATATGTTTCACGTTTTGTGAAAACTTCTCGTCTTAAACAAGAAGAATACTTTGGACGGTCCAAATTTATGAAGATTGGAGATCTCAAGGGTCTATTTGGACTTTTAATGGTTAACATACATATGCTGAGAACTAAATTCAAAGTGTTGGATATTTCTTATGGAGGTGGAACAGCCAATACTGCTCTTGTATATCACCATGGGAAGCTTCTAGCTCTCTCAGAAGCAGATAAACCTTATGCTATTAAAGTTTTTGAAGACGGTGATTTGCAGACACTTGGATTGCTAGATTATGATAAAAGATTGGGCCACTCCTTCACTGCTCATCCAAAAGTTGATCCATTTACTGGGGAGATGTTTACATTTGGCTATGCACATACACCACCATATATCACATACAGAGTAATTTCAAAAGATGGTTATATGCATGATCCTGTACCCATAACAGTATCAGATCCCATCATGATGCATGACTTTGCCATCACAGAGAATTATGCAATATTCATGGATCTTCCTCTAATTTTTAGGCCAAAGGAAATGGTGAAGAATAATACATTGATATTCTCATTTGATTCAACCAGGAAAGCCCGTTTTGGTGTGCTACCTCGGTATGCTAAGGATGAAAAGAGTATTAGATGGTTTGAGCTACCAAACTGCTTCATATTCCACAATGCCAATGCTTGGGAGGAGGAAGATGAAGTTGTTCTGATCACATGCCGCCTTCAGAATCCAAAGTTGGACAACGTCGGTGGGGCTGTCCAGGAAAAGCATGAAAATTTCTCAAATGAGCTGTATGAAATGAGATTTAACATGAAAACTGGTGAAGCTTCTCAAAAGAAACTGTCAGCCTCTGCTGTAGATTTTCCTAGAGTCAATGAAAGCTACACTGGCAGGAAGCAGCGATATGTTTATGGTACCACATTAGACAACATTGCAAAAGTTACCGGTGTTATCAAATTTGATTTGCTTGCCGAACCAGATCATGGAAAAGAAAAGCTTGAAGTTGGAGGAAATGTTCAGGGACTCTATGACTTGGGACCAGGAAAGTTTGGCTCGGAAGCTGTTTATATCCCTCGTGTCCCTGGAATAGACTCCGAAGAAGATGATGGATACTTGGTCTTGTTTGTACATGATGAAAATGCAGGAAAATCATTTGTGCATGTCATTGATGCAAAAACAATGTCAGCAGATCCCGTTGCGGTTGTGGAATTGCCCAATAGAGTTCCATATGGTTTCCATGCCTTCTTTGTGACTGAGGAACAATTGCAAGAACAAGCAAAACTGTGA 1632 0.4148 MGDDGKKNGGEGELVKVEPKPSNGFTSKVIDLLEKLVVKFLYDTSLPHHYLTGNFAPVTETPPIKDLPVKGHLPDCLNGEFVRVGPNPKFSPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVKTSRLKQEEYFGRSKFMKIGDLKGLFGLLMVNIHMLRTKFKVLDISYGGGTANTALVYHHGKLLALSEADKPYAIKVFEDGDLQTLGLLDYDKRLGHSFTAHPKVDPFTGEMFTFGYAHTPPYITYRVISKDGYMHDPVPITVSDPIMMHDFAITENYAIFMDLPLIFRPKEMVKNNTLIFSFDSTRKARFGVLPRYAKDEKSIRWFELPNCFIFHNANAWEEEDEVVLITCRLQNPKLDNVGGAVQEKHENFSNELYEMRFNMKTGEASQKKLSASAVDFPRVNESYTGRKQRYVYGTTLDNIAKVTGVIKFDLLAEPDHGKEKLEVGGNVQGLYDLGPGKFGSEAVYIPRVPGIDSEEDDGYLVLFVHDENAGKSFVHVIDAKTMSADPVAVVELPNRVPYGFHAFFVTEEQLQEQAKL* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1689 543 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE 1-3 5 539 - -
Vra2g1689 543 Pfam Retinal pigment epithelial membrane protein 55 532 IPR004294 GO:0016702
Vra2g1689 543 PANTHER BETA-CAROTENE DIOXYGENASE 5 539 IPR004294 GO:0016702
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1689 Vra-Chr2 25170879 25178051 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1689 2 25170879 25178051 Vra2g1689 2 25170879 25178051 ECH