Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1685 ATGGAGTCTGAAGGCGAAGCTGGGGCAAAGCCAGTGACAGCATTGAGTGCCCAAGTGTGCCAGATATGTGGTGATGGTGTTGGGAAGAATGTGGATGGTGAACCATTCATTGCGTGCGATGTTTGTGCTTTCCCTGTATGCAGACCCTGCTATGAGTATGAAAGGAAGGATGGGAATCAGTCTTGTCCCCAGTGCAAAACCCGGTACAAGAGGCACAAAGGGAGTCCTGCAATTCTTGGAGACACGGAAGAGGATGGTGCTGCTATTGATGGTGCCGCTATTGATGGTGCCAGTGACTTTAATTACGATTCAGACACTCAAAACCAAAAGCAGAAGATTTCAGAGCGCATGTTAAGCTGGCAATTGACTTATGCACGAGGAGAGGAGGTCGGTGCTCCAAATTATGATAAGGAAGTTTCTCACAACCATATTCCTCTGTTGACCAGTGGACAAGAGGTGTCCGGAGAGTTGTCTGCAGCCTCACCTGAGAGGCTCTCAATGGCATCTCCTGCAGCTGGTGGAGGAAAACGTGTTCATAATATTCCATATTCATCTGATATTAATCAATCTCCTAATGTCAGAGCAGGGGATCCAGGTTTGGGTAATGTTGCATGGAAAGAAAGAGTTGATGGCTGGAAGATGAAGCAAGAAAAAAATGTTGTTCCTATGAGCACCGGCCAAGCTGCTTCTGAGAGAGGAGCTGGAGATATTGATGCTACTACTGATGTGCTTGTGGATGATTCCTTGTTGAACGACGAAGCTCGACAGCCTCTTTCTAGGAAGGTTTCGATTCCATCATCTAGGATAAATCCATATCGTATGGTCATTATGTTGCGGCTGGTTATCCTTTGCATTTTCTTGCATTATCGGATAACGAATCCAGTGCCGAATGCATATCCATTGTGGTTGGTATCAGTTATATGTGAGATTTGGTTTGCCATATCTTGGATATTGGATCAATTCCCCAAGTGGCTTCCTGTCAACCGTGAAACATATCTTGACAGGCTCGCATTGAGGTATGATAGGGAAGGAGAACCTTCACAACTAGCTGCCGTTGACATTTTTGTCAGTACTGTTGATCCATTAAAGGAACCTCCTCTTGTGACTGCCAATACTGTACTGTCTATTCTGGCAGTTGACTACCCTGTGGATAAGGTCTCCTGCTATGTGTCTGATGATGGTGCTGCTATGTTGACTTTTGAAGCCCTTGCCGAGACATCAGAATTTGCGAGGAAATGGGTTCCCTTTTCCAAGAAGTATAGCATTGAACCCCGTGCACCCGAGTGGTACTTTGCACAAAAGATTGACTACTTGAAAGATAAGGTTCATCCATCATTTGTCAAGGATCGTAGAGCAATGAAGAGAGAATATGAGGAATTCAAAGTTCGTATCAATGGACTAGTTGCAAAGGCACAAAAAATTCCCGAAGAAGGATGGGTGATGCAAGATGGTACACCATGGCCTGGAAATAACACCAGAGACCATCCCGGAATGATTCAGGTTTTCTTGGGCCAAAGTGGAGGACTTGACACTGAGGGCAATGAACTTCCCCGTTTAGTCTATGTGTCTCGTGAAAAGCGCCCAGGTTTCCAACATCACAAGAAAGCTGGTGCAATGAATGCACTTGTAAGAGTATCTGCAGTCCTTACTAATGGACCTTTCTTATTGAATCTTGATTGTGATCACTACATAAACAACAGCAAGGCCTTGAGGGAAGCTATGTGCTTTATGATGGATCCCAACCTTGGTAAACATGTTTGTTATGTCCAGTTTCCGCAGAGGTTTGATGGTATTGATAGAAATGATCGTTATGCCAATCGTAATACAGTGTTCTTTGATATAAACTTGAGAGGCTTGGATGGCATTCAGGGTCCTGTTTATGTTGGTACTGGATGTGTCTTCAATAGGACAGCTTTATATGGTTATGAACCACCTCTTAAACCCAAGCACAAAAAGCCTGGGTTGTTATCATCACTTTGTGGTGGAAATCGGAAGAAGAGTTCAAAGTCTAGTAAGAAAGGATCAGACAAGAAAAAATCTGGGAAGAATGTTGACCCAACTGTACCTATTTTCAGTCTAGAGGATATAGAAGAAGGAGTAGAAGGTACTGGATTTGATGATGAGAAATCACTACTTATGTCACAAATGAGCCTTGAGAAAAGGTTTGGTCAGTCTGCAGTTTTTGTAGCCTCCACTCTTATGGAGAATGGTGGTGTTCCTCAGTCTGCTACTCCAGAAACTCTTCTTAAGGAGGCTATTCATGTTATCAGCTGTGGTTATGAGGATAAATCAGAATGGGGATCGGAGATAGGATGGATCTACGGTTCTGTCACAGAAGATATTCTTACCGGATTTAAGATGCATGCCCGCGGTTGGCGGTCAATATACTGCATGCCTAAGCGGCCGGCGTTTAAAGGTTCTGCTCCCATCAATCTTTCTGACCGTCTAAACCAAGTGCTCCGATGGGCTTTAGGTTCTGTGGAAATTCTTTTCAGTAGACATTGTCCCATCTGGTATGGTTATGGTGGAAGGCTAAAGTGGCTTGAAAGGTTTGCTTATGTGAACACCACAATCTATCCAGTCACAGCCATTCCCCTTCTCATTTATTGTATCTTGCCCGCAGTCTGTCTGCTCACCAACAAGTTCATCATTCCGCAGATCAGTAACCTTGCAAGCATATGGTTCATCTCTCTCTTTCTTTCCATCTTTGCAACCGGAATCCTGGAGATGAGGTGGAGCGGCGTAGGAATCGACGAGTGGTGGAGGAATGAACAGTTCTGGGTCATCGGCGGTGTGTCGGCCCATCTCTTCGCCGTTTTCCAGGGCCTTCTGAAAGTGCTGGCTGGAATTGACACCAACTTCACTGTGACCTCGAAGGCCTCAGATGAAGATGGAGATTTTGCTGAGCTCTACATGTTCAAATGGACCACCCTTCTGATCCCTCCCACAACCCTTCTCATAATAAACCTTGTAGGAGTTGTTGCTGGCATCTCCTACGCCATCAACAGTGGCTACCAATCCTGGGGACCCCTCTTTGGGAAGCTTTTCTTTGCATTCTGGGTCATCATCCATCTCTACCCTTTCCTCAAAGGTCTCATGGGCCGCCAGAACAGAACACCAACCATTGTGGTGGTGTGGTCCATTCTGCTTGCATCCATTTTCTCTCTGTTGTGGGTGAGAATTGATCCTTTCACCACAAGGGTCACTGGCCCTGATGTTGAAGAGTGTGGTATTAACTGCTAG 3243 0.4527 MESEGEAGAKPVTALSAQVCQICGDGVGKNVDGEPFIACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPAILGDTEEDGAAIDGAAIDGASDFNYDSDTQNQKQKISERMLSWQLTYARGEEVGAPNYDKEVSHNHIPLLTSGQEVSGELSAASPERLSMASPAAGGGKRVHNIPYSSDINQSPNVRAGDPGLGNVAWKERVDGWKMKQEKNVVPMSTGQAASERGAGDIDATTDVLVDDSLLNDEARQPLSRKVSIPSSRINPYRMVIMLRLVILCIFLHYRITNPVPNAYPLWLVSVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALAETSEFARKWVPFSKKYSIEPRAPEWYFAQKIDYLKDKVHPSFVKDRRAMKREYEEFKVRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGQSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHKKPGLLSSLCGGNRKKSSKSSKKGSDKKKSGKNVDPTVPIFSLEDIEEGVEGTGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPETLLKEAIHVISCGYEDKSEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKWLERFAYVNTTIYPVTAIPLLIYCILPAVCLLTNKFIIPQISNLASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEECGINC* 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1685 1080 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 94 IPR013083 -
Vra2g1685 1080 MobiDBLite consensus disorder prediction 650 686 - -
Vra2g1685 1080 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 475 643 IPR029044 -
Vra2g1685 1080 PANTHER CELLULOSE SYNTHASE 5 1080 - -
Vra2g1685 1080 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 5 1080 - -
Vra2g1685 1080 SUPERFAMILY RING/U-box 5 88 - -
Vra2g1685 1080 SUPERFAMILY Nucleotide-diphospho-sugar transferases 366 880 IPR029044 -
Vra2g1685 1080 CDD mRING-HC-C4C4_CesA_plant 18 68 - -
Vra2g1685 1080 Pfam Zinc-binding RING-finger 10 86 IPR027934 -
Vra2g1685 1080 Pfam Cellulose synthase 352 1073 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1685 Vra-Chr2 25097974 25104870 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1685 2 25097974 25104870 Vra2g1685 2 25097974 25104870 ECH
Vra2g1685 2 25097974 25104870 Vra5g2033 5 25945458 25952204 PCT