Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1683 ATGAAAACGCTAACAGTTAACACCGAAGATTCTTTTTCCAGTCTGCTAGAGCTTGCCTCTAACAATGATATTGAAGGTTTTAAGGTTCTTTTAGAGAAGGATCCTTCTGCGATCAACGAGGTTGGATTCTGGTATGGACGTCAAAACGGATCAAAGCAAATTGTTCTTGAGCATCGCACTCCTCTGATGGTCGCAGCTACTTACGGTAGCAATGATGTTCTCAAGCTTATTCTGATGTGCCCTGAGGCTGATGTGAATTTCGCATGTGGGGCGAATAAAACCACTGCCCTTCACTGTGCTGCTTCTGGTGGGTCTGCCAATGCTGTTGAAACTGTGAAGCTGCTATTATCCGCAGGTGCTGATGCGAGTTGCATGGATGCCTATGGAAATCGCCCAGTAGATGTGATTGTTGTCCCTCCTAAGCTGCAAGAAATGAAACCTGTGCTTGAGGAGCTTTTATCCGACAGTGCTTCGGACGGGTCTATTGGTGGGTCCATTGGTGAATTATCTGTTCCTGTGTCTGTCAATTCATCCAGCCCTGGTTCCCCTAATGGTTTGCCATACTCTCCGTCAGACTCGCCACCATCTCCTGTGGTAGCAAAGTTTACTGAAGCAGCTATTGGGTCTTTGTCAGAGAAGAAGGAGTATCCCATAGATCCATCTCTGCCTGATATAAAGAACAGCATATACGCCACTGACGAGTTTCGGATGTTTTCCTTCAAGGTCAGGCCTTGTTCCAGGGCCTACTCTCATGATTGGACGGAGTGCCCATTTGTTCACCCCGGAGAGAACGCAAGGAGGAGAGACCCTAGGAAGTTTCATTACAGTTGTGTGCCGTGCCCTGATTTTAGGAAAGGGGCTTGTAGGCGAGGAGACATGTGTGAATATGCTCATGGGGTGTTTGAGTGCTGGCTTCACCCGGCTCAGTATCGGACACGGCTTTGCAAAGATGGTACTAGCTGCAATCGTAGGGTGTGTTTTTTCGCTCACACTGCAGAGGAGCTGCGTCCACTGTATGTATCCACTGGATCTGCTGTTCCTTCACCACGATCATCGGCCTCGGCTCCTAATGTCATGGACATGGCTGCTGCGATGAGCCTTCTGCCGGGTTCGCCTTCGGCTGTCTCTTCCATGTCGCCATCTCACTTTGGGCAACCAATGTCCCCATCTGCCAATGGCATGTCACTTTCCTCTGGTGCCTGGGCACAGCCAAACGTGCCTGCTCTTCATTTACCAGGAAGCAATCTTCAATCTAGCCGATTGAGGTCTTCCCTTAGTGCACGAGACATTCCACCGGAAGACTTGAACGGAATGCTTGATCTTGATGGCCACCAGCACCCTTTGAATGACTTGAGCTGTTACTTACAGCCTCGCCCTGGTGCTGGTTCTGTGAGTCGATCTGGTCGGTCCAAGACCCTAACTCCAGCAAATCTGGAAGAGCTTTTTTCTGCTGAAATTTCATCGTCTCCCCGGTATTCGGATCCAGCAGCGGCGTCTGTGTTTTCTCCAACCCACAAATCAGCTGTTCTCAATCAGTTTCAACAGATTCAGAGCATGTTATCACCAATTAATACTAATTTACTTTCTCCTAAGAGCGTTGACCATCCTCTTTTACAGGCCTCCTTTGGCGTCTCTTCGTCTGGAAGGATGTCACCAAGAAGTGTGGAACCAATCTCACCGATGAGCACACGCATGTCGGCGTTTGCTCAGCGTGAGAAACAGCAGCAGCAGCAGCTACAGCTGCGAAGTGTCAGTTCAAGGGACCTTGGTGCCAACAGTCCTGCCTCAATTGTTGGCTCACCTGTAAACGGTTGGTCCAAGTGGGGATCTCCTAATGGAAAAGCTGATTGGTCAGTAAACGGAGACGAGCTTGGTGGTAAGATGCGAAGGTCATCCTCGTTCGAGCTTAAGCACAATGGTGAAGAGCCTGATCTGTCATGGGTCCAGTCTCTGGTGAAGGAATCCCCACCTGAGATGATGAAAGAGAAGTTTGCTTCTCCTCTGCCCACAGCTCCATCAGCGGATGGACCAAATTCTAATCCTCAAATTGAATCCATTGATCATTCCGTTTTAGGAGCCTGGCTTGAGCAAATGCAACTGGATCAGCTTGTAGTCTAG 2118 0.4924 MKTLTVNTEDSFSSLLELASNNDIEGFKVLLEKDPSAINEVGFWYGRQNGSKQIVLEHRTPLMVAATYGSNDVLKLILMCPEADVNFACGANKTTALHCAASGGSANAVETVKLLLSAGADASCMDAYGNRPVDVIVVPPKLQEMKPVLEELLSDSASDGSIGGSIGELSVPVSVNSSSPGSPNGLPYSPSDSPPSPVVAKFTEAAIGSLSEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASAPNVMDMAAAMSLLPGSPSAVSSMSPSHFGQPMSPSANGMSLSSGAWAQPNVPALHLPGSNLQSSRLRSSLSARDIPPEDLNGMLDLDGHQHPLNDLSCYLQPRPGAGSVSRSGRSKTLTPANLEELFSAEISSSPRYSDPAAASVFSPTHKSAVLNQFQQIQSMLSPINTNLLSPKSVDHPLLQASFGVSSSGRMSPRSVEPISPMSTRMSAFAQREKQQQQQLQLRSVSSRDLGANSPASIVGSPVNGWSKWGSPNGKADWSVNGDELGGKMRRSSSFELKHNGEEPDLSWVQSLVKESPPEMMKEKFASPLPTAPSADGPNSNPQIESIDHSVLGAWLEQMQLDQLVV* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1683 705 SMART ANK_2a 57 87 IPR002110 GO:0005515
Vra2g1683 705 SMART ANK_2a 92 124 IPR002110 GO:0005515
Vra2g1683 705 SMART ANK_2a 10 40 IPR002110 GO:0005515
Vra2g1683 705 Gene3D - 3 156 IPR036770 -
Vra2g1683 705 Gene3D - 274 337 - -
Vra2g1683 705 MobiDBLite consensus disorder prediction 656 685 - -
Vra2g1683 705 SUPERFAMILY Ankyrin repeat 10 137 IPR036770 -
Vra2g1683 705 MobiDBLite consensus disorder prediction 173 195 - -
Vra2g1683 705 SMART c3hfinal6 309 332 IPR000571 GO:0046872
Vra2g1683 705 SMART c3hfinal6 274 300 IPR000571 GO:0046872
Vra2g1683 705 MobiDBLite consensus disorder prediction 376 396 - -
Vra2g1683 705 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Vra2g1683 705 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 1 703 - -
Vra2g1683 705 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Vra2g1683 705 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 279 299 IPR000571 GO:0046872
Vra2g1683 705 PANTHER UNKEMPT FAMILY MEMBER 1 703 IPR045234 -
Vra2g1683 705 ProSiteProfiles Zinc finger C3H1-type profile. 279 301 IPR000571 GO:0046872
Vra2g1683 705 Pfam Ankyrin repeats (3 copies) 19 124 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1683 Vra-Chr2 25058944 25062506 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vra2g1683 Ank_2 1.7e-09 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1683 2 25058944 25062506 Vra2g1683 2 25058944 25062506 ECH
Vra2g1683 2 25058944 25062506 Vra5g2032 5 25922924 25927428 PCT