Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1682 ATGGAGAACAACAATGGCAATTCTCAAGAACCTAACAACAACAAACGAGGAATTCCATTCATGGTTTTCTTCAAAGACGCAAGACATATTTTGAAGCTGGATTCTCTCTCTAGAGAGATATTAGGGATTGCATTCCCTGCTGCTCTTGCTGTTGCTGCTGATCCCATTGCTTCTTTGATAGACACAACTTTCATAGGCCACTTGGGAGCACTTGAACTTGCTGCTGCAGGAGTTTCCATTGCTGTGTTCAACCAAGCTTCAAGAATTACAACTTTTCCTCTTGTTAGTATCACAACTTCCTTTGTGGCTGAGGAAGATACCATAAAAAACTTGACCACCAAACAAACTGAAAATGATAACACAAACCTAGACAAACCAATTGTGTCTGAGGATCATATGCTTCCACAAACAGACAACGTTGATGCTCCAAAAGAAACAAACAGTTCTAATCTGGAAAAAGTTGACGCAGGAAACATGGACATGAATAATGAAAATGGTACTTCGGAAAAAGCTATGACTAAGAGGAAGCAAAAAGTTGGGAAGAAGGTTATTGCTTCAGCTTCAACAGCCTTAATTTTTGGAACAATCCTTGGCCTCCTTCAAACTGCAATCCTTTCATTTGCAGCAAAACCTCTTCTCTATGCAATGGGTCTAAAACATGATTCTCCAATGCTAAATCCAGCAGAGAAGTACCTAAAATTAAGATCAATTGGGTCTCCTGCTGTTCTACTCTCTTTGGCCGTGCAAGGAATCTTTAGAGGTTTTAAAGATACAACAACTCCTTTATATGTCATTGTTTCGGGATATGCTTTCAATGTTCTATTGGACCCAATACTTATCTTTTATGTGAAATTGGGCCTGAAAGGTGCAGCCATGGCCCATGTTATCTCCCAGTACATTATGGCAACCATCCTCCTTATATTGTTAATGAAAAGAGTGAACCTCCTACCTCCAAACATGAAGGATTTGCAGATGTTCAGATTTCTCAAAAATGGGAGTCTATTGTTGATAAGGGTAGTTTCAGTGACATTTTGTATGACATTAGCATCATCACTGGCAGCAAGGCTTGGTTCCATTCCCATGGCTGCATTTCAACCAGGCCTTCAGATCTGGTTGGCATCATCCCTTCTTGCTGATGGTTTAGCAGTTGCAGTACAGACAATTCTTGCTTGTTCCTTTGCTGAAAAAGACTACCACAAGGCTACTGCTGCTGCAACAAGGACCCTACAAATGACTTTTGTTTTGGGATTTGGACTCTCTCTTGCAGTTGCTCTTGGATTATACTTTGGAGCTCCAATCTTTTCCAAAAATACAACTGTTGTGCAATTAATCAAAATAAGCATGCCGTTTGTTGCAGCTACTCAACCAATCAATTCATTGGCTTTTGTCTTTGATGGTGTCAATTATGGTGCTTCAGATTTTGCTTATTCTGCTTATTCTTTGGTTTTGGTGTCATTAGTGAGTATTCCTATAGAAATCTTTCTCTTCAGAAGCAAACAATTTATTGGAATATGGATTGCATTAAGTATATACATGATTCTTCGTATGTTAGTTGGTATATGGAGGATGGGAACTGGAACAGGACCATGGTACTATCTTAGAAAAGAACCATGGTGTTACATGAGAGGCCCCTTGTTACCATAG 1644 0.3954 MENNNGNSQEPNNNKRGIPFMVFFKDARHILKLDSLSREILGIAFPAALAVAADPIASLIDTTFIGHLGALELAAAGVSIAVFNQASRITTFPLVSITTSFVAEEDTIKNLTTKQTENDNTNLDKPIVSEDHMLPQTDNVDAPKETNSSNLEKVDAGNMDMNNENGTSEKAMTKRKQKVGKKVIASASTALIFGTILGLLQTAILSFAAKPLLYAMGLKHDSPMLNPAEKYLKLRSIGSPAVLLSLAVQGIFRGFKDTTTPLYVIVSGYAFNVLLDPILIFYVKLGLKGAAMAHVISQYIMATILLILLMKRVNLLPPNMKDLQMFRFLKNGSLLLIRVVSVTFCMTLASSLAARLGSIPMAAFQPGLQIWLASSLLADGLAVAVQTILACSFAEKDYHKATAAATRTLQMTFVLGFGLSLAVALGLYFGAPIFSKNTTVVQLIKISMPFVAATQPINSLAFVFDGVNYGASDFAYSAYSLVLVSLVSIPIEIFLFRSKQFIGIWIALSIYMILRMLVGIWRMGTGTGPWYYLRKEPWCYMRGPLLP* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1682 547 TIGRFAM matE: MATE efflux family protein 46 505 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra2g1682 547 MobiDBLite consensus disorder prediction 140 168 - -
Vra2g1682 547 Pfam MatE 185 278 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra2g1682 547 Pfam MatE 337 492 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra2g1682 547 PANTHER PROTEIN DETOXIFICATION 13 542 - -
Vra2g1682 547 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 13 542 IPR044644 -
Vra2g1682 547 MobiDBLite consensus disorder prediction 134 174 - -
Vra2g1682 547 CDD MATE_DinF_like 38 525 IPR044644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1682 Vra-Chr2 25043674 25049552 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1682 2 25043674 25049552 Vra2g1682 2 25043674 25049552 ECH
Vra2g1682 2 25043674 25049552 Vra5g2031 5 25908646 25916563 PCT