Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1680 ATGAGGAAACCTGATCTGATGGCCAACAAGGACAGAATGAAAGACATTATTAAGAGCAAGTTGAGAAAAGGGTTGTGGTCACCTGATGAAGATGAGAAGCTGATAAGGTACATGCTCACAAATGGACAAGGCTGTTGGAGTGACATTGCAAGAAACGCAGGTCTCCAACGATGTGGCAAAAGTTGTCGTCTTCGTTGGATTAATTACTTGAGACCTGACCTCAAACGTGGTGCATTCTCTTCCCAGGAACAACACCTCATCTTTCATTTGCATTCCATTTTTGGTAACAGGTGGTCTCAGATTGCAGCACGTCTCCCTGGTCGGACAGACAATGAAATAAAGAATTTCTGGAACTCTACATTGAAGAAAAGGATGAAAACCAACACTTCACTGAACAACAGCACTGACTCATCAGAGTCTAAAGATGTTCTGAGTGGGATCATGCCCTTTAATGAACATGACATCATGAACATGAGCATGGATTCCTCTTCATCCATATCATCCATGCAAGCAATGGTTTTGTCTGACCAATTTGACCCTTTTTCCTTGTTGGTAAACAATCACTGTGATATGACTAATGTTTCAGAAATTTTTACCTGCATGGAAGATGGACACCAAGTGAATCATGGGACATTGGAAGAAAATAACAAAATGCTTCCTTCATTAGAAAGTAGAAGCATTGAAAGTGACAGTGTTCCAATTGATGTGAAAAGCCATAACAACCACTTCAATTATGATTCCTTCAATAACACTGATAAGATTCAAGGTTCCAAGGTAGAGGACTTATTTGGGTTTTCAAATCATGGCCAAGGGGAATTTTATTTGGAGAATTTGATGCAAGACATAACCTCTTTTCCTTTCCTTGATTTTTAA 873 0.3952 MRKPDLMANKDRMKDIIKSKLRKGLWSPDEDEKLIRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSSQEQHLIFHLHSIFGNRWSQIAARLPGRTDNEIKNFWNSTLKKRMKTNTSLNNSTDSSESKDVLSGIMPFNEHDIMNMSMDSSSSISSMQAMVLSDQFDPFSLLVNNHCDMTNVSEIFTCMEDGHQVNHGTLEENNKMLPSLESRSIESDSVPIDVKSHNNHFNYDSFNNTDKIQGSKVEDLFGFSNHGQGEFYLENLMQDITSFPFLDF* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1680 290 CDD SANT 26 70 IPR001005 -
Vra2g1680 290 ProSiteProfiles Myb-like domain profile. 18 70 IPR001005 -
Vra2g1680 290 Pfam Myb-like DNA-binding domain 76 120 IPR001005 -
Vra2g1680 290 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Vra2g1680 290 PANTHER MYB DOMAIN PROTEIN 55 1 290 - -
Vra2g1680 290 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Vra2g1680 290 PANTHER TRANSCRIPTION FACTOR MYB83 1 290 - -
Vra2g1680 290 Gene3D - 77 144 - -
Vra2g1680 290 SUPERFAMILY Homeodomain-like 21 117 IPR009057 -
Vra2g1680 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 125 IPR017930 -
Vra2g1680 290 CDD SANT 78 121 IPR001005 -
Vra2g1680 290 Gene3D - 20 76 - -
Vra2g1680 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 70 IPR017930 -
Vra2g1680 290 SMART sant 22 72 IPR001005 -
Vra2g1680 290 SMART sant 75 123 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1680 Vra-Chr2 25020979 25022700 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra2g1680 Myb_DNA-binding 1.1e-12 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1680 2 25020979 25022700 Vra2g1680 2 25020979 25022700 ECH