Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1667 ATGAAACATGAACAAATTTTCCAAGGTAACTGTGGAGATAAGATGAGCATTGTGTATAGCCATGCTGTGAAGTATTCCCAAGAAGTGACAAGGATGAACACAGAGATGGATTCAAATATCGGTCAACATTGTCACCAACAAAATTCTGGGCTAATGAGGTACCGTTCTGCCCCAAGCTCATTGCTCACAAATCTTGTGAACAATAACAGCAACAACATCAACAACAACAACATTGGTTGTGTCAATGATGAAACTTTCAGAAGTGACCATAATAACCATCATCATCAGCAGCAGCAGAGCTATCATCCCTCCACAAGTTCTGAAATGGAGACCATGTTGGCCAAGTTGATTTCTTCCGATGATTCTGAGCCTTTGCAAGAGTTTGGAGGGAAGCCAGTGAAGGAAGAAGCAGGGGACAGTGGTTACTCTTTCGGATCGTCACCTCAGATAATGTACCAAACTCAGCAAGTTCAAGGCTTTTCTATGCCAAATGGTTCTTTAAGGCCTGCAGGGAATGGTTTTGATAGCTCATTCAGTGCAGTGAATTCCATGGCTTCTCAGAATTCCACACAAACCAAAATGGTTGCTTCCACCAATTGCTCCAATCTCATTAGGCAAAAGAGTTCTCCTGCAGGGTTTTTCTCCAACTACTCAGTTGATAACACAATGAGAGAGGTGGGAAGTTTTAGGAGCTGTGATGTATCAAATGGGCAAGCTATTGCATCAGATAGTGGATTGCATGGTACTTTGAACTTCTCATCAAGGATATCATCATCTTCTTGCTCCACCAGAATGCCACAGATTGCTGAAAATGGAAATGAAGTTGTGGAAGTTGAAAGCAGAAACCTGAGGAATGACAGTGGCAACACTAAGTGTTACATGCCTAGTTTCACCTCTGACTTCTGGGATGGTTCTGCAATCAGTGCCTCCAGAACAGCTACTAACAACTGTGAAATATCATTTTCCACTTCAAATGCAATGGATATTCAGAATGCAGATTTTGGATATCAGAAACTTGGTCTGACCCATCATTTGAGTCTTCCTAGCTCTTCTACCAGAATGGCTACCATGGAGAAGTTATATCAAACTCAAGGAACTGTTCCATGCAAAATTCGTGCCAAGAGAGGTTTTGCCACTCACCCAAGAAGCATTGCTGAAAGGGAAAGAAGAACAAGAATCAGTGCAAGAATCAAGAAATTGCAAGACCTTTTCCCAAAATCAGACAAGCAAACAAGCACAGCGGATATGTTGGATTTGGCTGTTGAGTACATCAAAGACCTGCAGAAACAAGTTAAGATGCTGGCTGACACTAGGGCAAAGTGCACTTGTAGAAGTAACCAGAAGCAATAA 1350 0.42 MKHEQIFQGNCGDKMSIVYSHAVKYSQEVTRMNTEMDSNIGQHCHQQNSGLMRYRSAPSSLLTNLVNNNSNNINNNNIGCVNDETFRSDHNNHHHQQQQSYHPSTSSEMETMLAKLISSDDSEPLQEFGGKPVKEEAGDSGYSFGSSPQIMYQTQQVQGFSMPNGSLRPAGNGFDSSFSAVNSMASQNSTQTKMVASTNCSNLIRQKSSPAGFFSNYSVDNTMREVGSFRSCDVSNGQAIASDSGLHGTLNFSSRISSSSCSTRMPQIAENGNEVVEVESRNLRNDSGNTKCYMPSFTSDFWDGSAISASRTATNNCEISFSTSNAMDIQNADFGYQKLGLTHHLSLPSSSTRMATMEKLYQTQGTVPCKIRAKRGFATHPRSIAERERRTRISARIKKLQDLFPKSDKQTSTADMLDLAVEYIKDLQKQVKMLADTRAKCTCRSNQKQ* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1667 449 Gene3D - 379 449 IPR036638 GO:0046983
Vra2g1667 449 Pfam Helix-loop-helix DNA-binding domain 383 428 IPR011598 GO:0046983
Vra2g1667 449 MobiDBLite consensus disorder prediction 122 141 - -
Vra2g1667 449 MobiDBLite consensus disorder prediction 85 106 - -
Vra2g1667 449 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 40 446 - -
Vra2g1667 449 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 40 446 - -
Vra2g1667 449 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 380 440 IPR036638 GO:0046983
Vra2g1667 449 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 377 427 IPR011598 GO:0046983
Vra2g1667 449 SMART finulus 383 433 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1667 Vra-Chr2 24809612 24813425 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra2g1667 HLH 1.9e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2152 5 27374674 27377664 Vra2g1667 2 24809612 24813425 ECH
Vra2g1667 2 24809612 24813425 Vra2g1667 2 24809612 24813425 ECH