Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1662 ATGAAACTGGTTGTGGAGGTTATTAATGCTCATGATCTTATGCCAAAAGATGGTGAAGGATCAGCCAGTCCCTTTGTGGAAGTAGACTTTGAAAACCAGCTTAGTAGAACCAGAACTGTGCCAAAGAACCTCAACCCAACCTGGAACCAAAAACTACTCTTCCATTTGGATGCAACCAAACCTTACCATCGCCAAACTATTGAAGTATCAGTCTACAACGAGAGGAGACTCACTCCAGGCAGAAACTTCCTTGGAAGGGTCAGAATTCCTTGCTCCAACATTGTCAAGGAAGGTGAAGAAGTGTATCAGATTTTCCCACTTGAAAAGAAATGGTTTCTGTCTCCTGTTAAGGGTGAGATTGGCCTCAAAATATACATTGCATCAGAGTCAACAAACTCCAAACCAAAACCTCTTTCTCCTGTTTTCCCCTCAGAACTAGAAAAACTCCCACCTTCTACTCCACTCCAACCACCAGAATCAACAACTAGTACTACCCTTCCTCCTCCTCTTATTACTCCTTCAGACAGAACAACTTCAGAAGCTGATTCCATTGAAGAACTTCCTACATTTGACACCCCAAAATCAAGTATAGAAGAAGCAGAAGTATATTCTGGTGCACAAGTTCGGTCTGGTGGCGTTGGTATCGATCCAGATCCAAAGAAAGAAAGAAGAGAAGCTGTGCCAGAGACAACTCAACAACTAGACAAGCATCAAGTTCTCCAGCCACAGACGATTTCAATAAAGAGAAGACCACCAGGTACTCCATCTGCCATGCATTCAGTTGATCCTCAAGTCCAATCTAGTCATCATGAAAACTATAACCACAGTGACACCAATACACAGCCTAGGATTTCAGTAAAGAGGCGACCTCAAGCACAAGGTACTCCTTTCACAATGCACTCGGTTGATCCTCAAGTCCAACCAAGCCACGGTGAAGGCTACAATCACAATGACACCCACCAGAAGCCAAGAATTTCAATTAAAAGACGACCACGAGGACCCTTTAATCCACAAGTCCACGCGAGCCATGATGAAGCCTACAATCTCATGGGAACCAATCCACAACAGCCAAGAATTTTAGTAGAGAGGCAACCGCAGAATACTCCACTCACCACGCACCAAATTAGTCCTACTAGCCATGATGAAAACTACAGTCTCAATGACACCAACGCACGTCTTGGAGAAAGGTGGCCAAGTGAGGGAGCTTATGGCAGAAGAGGGTGGATGAGTGGTAGTGACAGATTCAGTAGTACATTTGATCTTGTTGAGCAGATGTATTATCTGTATGTTCGTGTTGTGAAGGCGAAAGATCTTCCTCCGAGCACCATCACCTCAAGCTGTGATCCTTATGTGGAAGTGAAGCTGGGGAACTACAAGGGAAGAACAAAGCACTTTGATAGGAAATTGAACCCGGAGTGGAACCAAGTGTTTGCTTTCTCCAAAGACCGCATTCAGTCTTCTGTTTTAGAAGTCTTCGTGAAAGATAAAGCAATGATGGGGAGAGATGAGTATATTGGAAGGGTGGTTTTTGACCTCAATGAGGTTCCAACAAGAGTTCCACCAGATAGTCCACTAGCTCCTCAGTGGTATCGGCTTGAGGACTGGCGCGAAGAAGGCAAGGTGAGGGGTGACATTATGCTTGCAGTTTGGATGGGAACACAAGCTGATGAGGCTTTCTCCGATGCTTGGCATTCTGATGCTGCCACTGTCTATGGTGAGGGTGTTTTCAACATCAGATCAAAGGTTTACATGTCACCAAAACTGTGGTATCTCAGAGTGAATGTCATTGAAGCTCAAGATGTGATACCGGGTGACAGAAACAGACTACCTGAGGTTTTTGTGAAAGCTCAAGTGGGGTGCCAACTACTAACAACCAAGATATGCCCCACCAGAACAACCACCCCATTTTGGAATGAAGATTTGATTTTTGTAGCCTGTGAGCCATTTGAGGAGCAACTAACAATCACTGTGGAGGATCGTGTGCACCCTTCAAAAGATGAGGTACTTGGGAAGATAATCCTACCAATGAACCTCTTTGAGAAGCGGCTAGACCAAAGGCCGGTTCATTCCCGCTGGTTCAGTCTGGAGAAATTTGGTTTTGGAATGTTAGAAGGTGATAGAAGAAATGAGCACAAGTTTTCAAGCAGGATTCACATGAGAGTTTGCCTTGAAGGTGGATACCATGTTCTGGATGAGTCCACATTGTACAGCAGTGATCAAAGGCCAACAGCGAGACAACTATGGAAGCAACCAATTGGGATACTTGAAGTAGGCATCTTAGGAGCTCAAGGGCTTCTCCCAATGAAGATGAGGGATGGCAGAGGCAGCACTGATGCATACTGTGTTGCCAAGTATGGTCAGAAATGGGTCAGAACCAGAACACTGCTTGACACTTTCAGTCCTAAATGGAATGAGCAATACACATGGGAGGTTTATGATCCTTGCACTGTGATAACATTGGGAGTTTTTGACAACTGCCATTTAGGTGGAGAAAAAGCTACAGGAAGGGATTCTCGTATTGGAAAGGTAAGAATAAGGCTATCAACACTTGAAGCTAATAGAACTTACACCAATTCTCACCCTCTTCTTGTTCTACACCCACATGGGGTTAAGAAGATGGGAGAGCTTCAGTTAGCAGTGAGGTTCACAGCACTCTCACTGGCTAACATAGTTCATATCTACGGCCAACCTTTGCTTCCCAAGATTCATTACTTGCACCCTTTCACAGTCAACCAAATAGACAACCTAAGGTACCAAGCAATGAACATTGTGGCTGAAAGGCTAGGCAGAGCCGAACCCCCACTCAGGAAGGAGGTGGTGGAGTACATGCTGGATGTTGATTCCCATATGTGGAGCATGAGAAGAAGCAAGGCTAACTTCTTCCGAATCATGTCACTTTTCTCTGGTATGATCAAAATGGGAAAGTGGTTCAGTGATGTTTGCCTCTGGAAGAACCATGTTACATCAATCCTAGTTCACATTCTCTTCCTTATACTGATATGGTACCCGGAATTGATCCTACCAACTGTGTTTCTATACATGTTCCTGATTGGTCTGTGGAACTACAGGTTCCGGCCAAGACACCCTCCTCAAATGGATCCTAAACTCTCCTGGGCCGAAGCTGTTCTTCCTGACGAACTAGATGAAGAGTTTGACACATTTCCAACTTCAAGATCACAAGATGTTGTGAGAATGAGGTATGACAGGCTTAGAACTGTGGCAGGTAGGATTCAGACAGTTGTTGGGGACATAGCCACACAAGGGGAGAGGTTTCAGTCTCTACTGAGTTGGAGAGACCCCAGAGCAACCAGCCTCTTTGTAGTGTTCAGCTTTTGTGCTGCTGTGACTCTCTATGCAACACCATTCAGAGTGGTGGCTCTGGTTACAGGCTTGTACTTTTTGAGACATCCAAGGTTTAGGAGCAAGATGCCTTCAGTACCAAGTAATTTCTTCAAGAGGCTCCCAGCTAGAACAGATAGTTTACTGTAA 3489 0.4488 MKLVVEVINAHDLMPKDGEGSASPFVEVDFENQLSRTRTVPKNLNPTWNQKLLFHLDATKPYHRQTIEVSVYNERRLTPGRNFLGRVRIPCSNIVKEGEEVYQIFPLEKKWFLSPVKGEIGLKIYIASESTNSKPKPLSPVFPSELEKLPPSTPLQPPESTTSTTLPPPLITPSDRTTSEADSIEELPTFDTPKSSIEEAEVYSGAQVRSGGVGIDPDPKKERREAVPETTQQLDKHQVLQPQTISIKRRPPGTPSAMHSVDPQVQSSHHENYNHSDTNTQPRISVKRRPQAQGTPFTMHSVDPQVQPSHGEGYNHNDTHQKPRISIKRRPRGPFNPQVHASHDEAYNLMGTNPQQPRILVERQPQNTPLTTHQISPTSHDENYSLNDTNARLGERWPSEGAYGRRGWMSGSDRFSSTFDLVEQMYYLYVRVVKAKDLPPSTITSSCDPYVEVKLGNYKGRTKHFDRKLNPEWNQVFAFSKDRIQSSVLEVFVKDKAMMGRDEYIGRVVFDLNEVPTRVPPDSPLAPQWYRLEDWREEGKVRGDIMLAVWMGTQADEAFSDAWHSDAATVYGEGVFNIRSKVYMSPKLWYLRVNVIEAQDVIPGDRNRLPEVFVKAQVGCQLLTTKICPTRTTTPFWNEDLIFVACEPFEEQLTITVEDRVHPSKDEVLGKIILPMNLFEKRLDQRPVHSRWFSLEKFGFGMLEGDRRNEHKFSSRIHMRVCLEGGYHVLDESTLYSSDQRPTARQLWKQPIGILEVGILGAQGLLPMKMRDGRGSTDAYCVAKYGQKWVRTRTLLDTFSPKWNEQYTWEVYDPCTVITLGVFDNCHLGGEKATGRDSRIGKVRIRLSTLEANRTYTNSHPLLVLHPHGVKKMGELQLAVRFTALSLANIVHIYGQPLLPKIHYLHPFTVNQIDNLRYQAMNIVAERLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMSLFSGMIKMGKWFSDVCLWKNHVTSILVHILFLILIWYPELILPTVFLYMFLIGLWNYRFRPRHPPQMDPKLSWAEAVLPDELDEEFDTFPTSRSQDVVRMRYDRLRTVAGRIQTVVGDIATQGERFQSLLSWRDPRATSLFVVFSFCAAVTLYATPFRVVALVTGLYFLRHPRFRSKMPSVPSNFFKRLPARTDSLL* 1163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1662 1162 MobiDBLite consensus disorder prediction 232 250 - -
Vra2g1662 1162 CDD C2A_MCTP_PRT_plant 2 128 - -
Vra2g1662 1162 Gene3D C2 domain 422 569 IPR035892 -
Vra2g1662 1162 Gene3D C2 domain 1 139 IPR035892 -
Vra2g1662 1162 Gene3D C2 domain 728 883 IPR035892 -
Vra2g1662 1162 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 128 IPR035892 -
Vra2g1662 1162 MobiDBLite consensus disorder prediction 215 231 - -
Vra2g1662 1162 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 753 884 IPR035892 -
Vra2g1662 1162 ProSiteProfiles C2 domain profile. 736 860 IPR000008 -
Vra2g1662 1162 ProSiteProfiles C2 domain profile. 572 693 IPR000008 -
Vra2g1662 1162 CDD C2D_MCTP_PRT_plant 754 879 - -
Vra2g1662 1162 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 589 744 IPR035892 -
Vra2g1662 1162 CDD C2C_MCTP_PRT_plant 590 742 - -
Vra2g1662 1162 Pfam Plant phosphoribosyltransferase C-terminal 1007 1162 IPR013583 -
Vra2g1662 1162 Pfam C2 domain 427 530 IPR000008 -
Vra2g1662 1162 Pfam C2 domain 753 862 IPR000008 -
Vra2g1662 1162 Pfam C2 domain 589 695 IPR000008 -
Vra2g1662 1162 Pfam C2 domain 2 106 IPR000008 -
Vra2g1662 1162 ProSiteProfiles C2 domain profile. 409 530 IPR000008 -
Vra2g1662 1162 CDD C2B_MCTP_PRT_plant 427 553 - -
Vra2g1662 1162 SMART C2_3c 754 859 IPR000008 -
Vra2g1662 1162 SMART C2_3c 427 524 IPR000008 -
Vra2g1662 1162 SMART C2_3c 590 690 IPR000008 -
Vra2g1662 1162 SMART C2_3c 2 103 IPR000008 -
Vra2g1662 1162 ProSiteProfiles C2 domain profile. 1 105 IPR000008 -
Vra2g1662 1162 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 426 566 IPR035892 -
Vra2g1662 1162 MobiDBLite consensus disorder prediction 150 164 - -
Vra2g1662 1162 MobiDBLite consensus disorder prediction 259 314 - -
Vra2g1662 1162 Gene3D C2 domain 577 722 IPR035892 -
Vra2g1662 1162 PANTHER C2 CALCIUM/LIPID-BINDING PLANT PHOSPHORIBOSYLTRANSFERASE FAMILY PROTEIN 3 94 - -
Vra2g1662 1162 PANTHER C2 CALCIUM/LIPID-BINDING PLANT PHOSPHORIBOSYLTRANSFERASE FAMILY PROTEIN 374 1162 - -
Vra2g1662 1162 MobiDBLite consensus disorder prediction 132 337 - -
Vra2g1662 1162 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 374 1162 - -
Vra2g1662 1162 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 3 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1662 Vra-Chr2 24749263 24752250 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2158 5 27439355 27442146 Vra2g1662 2 24749263 24752250 ECH
Vra8g0250 8 3149415 3153199 Vra2g1662 2 24749263 24752250 ECH
Vra3g0004 3 54861 58688 Vra2g1662 2 24749263 24752250 ECH
Vra2g1662 2 24749263 24752250 Vra2g1662 2 24749263 24752250 ECH