Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1610 ATGCAGGATATACATTCCATCTGCGGCGGTGACCGCAGGCTCAGACAGCACCACCACCACCACCAGCCGCTAAAGTGTCCGCGCTGTGACTCACTCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCCCAGCCACGCCATTTCTGCAAGAACTGCCGCCGCTACTGGACCAAAGGCGGCGTCCTTCGCAATGTCCCCGTCGGCGGTGGTTGCCGCAAGTCGAAACGCTCCAACAAACCAAAAACCACCGCCCACAACACCAACGATAGCAGCAGCAACAACAACAATCCTTCCCCTTCCTCGCAGATCGCTCCGGCAAACGCGTCCACGACGCCGTCTGCTGCGGAGCGGGAGCGCAACTCGAACTCCCACTCCAGCAGCGAAAGCTCCACCCTAACCGTCACGGAGGCGATGTCGGCGCCGACATCGAACACTTTGTCTAGCAACGCTTTGTTCCTGGACAACGTCCGCGAGTCGAAGCTGTTCGCTAACGCTAATAACCCCTCTTTGGAGGGCGGTGGCGTTTTCTCTGAGATAGGGAGCTTCACCGGCCTCATTGCTTCAAATAACGAAGCATTGGGGTTTGGGTTTGGGAATTGCAGTAATAACAACGGGAACGGCAACAGCAACAGCAACATCCTCGATGCGACGACGTTTCGGTTCGGCGTTACTCATCCGCAGGGGAATAATAATGATGAGGTACAAGTGGCGGGTGGTGGAGAGCAACAGCAGAATCATCATGAGGAGTTCGGTACGGCGTCGTTTCTGGATCTGACGGCGCCGGTGGAGTTTTGTTCGTTGGCGCAGAAGAGTGGTAATGAGGGAGGGTTTGGGTCGTTGGATTGGCAAGGCGGTGCGGATCAAGGTTTGTTTGATCTCCCTAACAGCGTTGATCAAACATACTGGAGTCACAGTCATTGGTCCGATCAAGATAATCCCTCTCTCTTTCACCTTCCTTGA 966 0.5487 MQDIHSICGGDRRLRQHHHHHQPLKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSNKPKTTAHNTNDSSSNNNNPSPSSQIAPANASTTPSAAERERNSNSHSSSESSTLTVTEAMSAPTSNTLSSNALFLDNVRESKLFANANNPSLEGGGVFSEIGSFTGLIASNNEALGFGFGNCSNNNGNGNSNSNILDATTFRFGVTHPQGNNNDEVQVAGGGEQQQNHHEEFGTASFLDLTAPVEFCSLAQKSGNEGGFGSLDWQGGADQGLFDLPNSVDQTYWSHSHWSDQDNPSLFHLP* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1610 321 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 12 308 IPR045174 GO:0003700|GO:0006355
Vra2g1610 321 MobiDBLite consensus disorder prediction 1 25 - -
Vra2g1610 321 Pfam Dof domain, zinc finger 22 78 IPR003851 GO:0003677|GO:0006355
Vra2g1610 321 MobiDBLite consensus disorder prediction 68 143 - -
Vra2g1610 321 ProSitePatterns Zinc finger Dof-type signature. 26 62 IPR003851 GO:0003677|GO:0006355
Vra2g1610 321 PANTHER DOF ZINC FINGER PROTEIN 4 12 308 - -
Vra2g1610 321 MobiDBLite consensus disorder prediction 83 143 - -
Vra2g1610 321 ProSiteProfiles Zinc finger Dof-type profile. 24 78 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1610 Vra-Chr2 24109042 24111087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1610 11 321 C2C2-Dof Transcription Factor Family AT5G60850 39.937 2.23e-58 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vra2g1610 zf-Dof 4.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1610 - - vun:114196340 485.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1967 7 39138046 39139499 Vra2g1610 2 24109042 24111087 PCT