Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1367 ATGGCGTCGCAAAGACTAGCTTTGATCACACTTCTCTTAACCCTTTCCGCTCTCTCTTCCTCACGCGCTGACAATGGTGGCATCGCCGTGTACTGGGGGCAAAACCTCAACGAAGGCTCATTGACAACCACATGTGACACTGGTAACTATGAAATTGTGCTCCTCGCTTTCCTCACCCAGTTCGGTGCAGGGAGAACCCCAGCTTGGAACTTCGCCGGTCACTGCGACAATGGTGCCTGGACACCTTGCACTGAACTAGAGTCCGAAATAAAATACTGCCAGGGGAAAGGCATAAAAGTGCTCCTTTCAATTGGAGGAGACAGTCCGAACTACTCAATAAGCTCGCCGGAGGATGCAAAGGAGGTGGCCAACTACATCTACACCAACTTCCTAAGCGGCAATTACGGTCCAGTGGGAAGCGTCACGCTGGACGGCGTCGACTTCGACATCGAAAGGACGGAGGATTACTGGGACAACCTTGCCAGGGAACTCGACTACTTCCGACAAACGACAGGGCGTTACTTTTACTTGTCGGCAGCCCCTCAGTGCCCTACAGACCCAATCTACTATCTCGGCAAAGCCATCGCCACCCAACTCTTCGACTACATCTTCGTTCAGTTCTACAACAACCCTAGTTGCTCCTACGCAAGTGGCATCCCCGCTATCTTGAACTCCTGGGACAGGTGGGTGAGCTTGGTCGCCTCCAACAACTCGCTCTTCGTGGGCGTGCCAGCAGCACCCAGCGCCGGCGCTGGTTATATTCCGCCGGAGGAACTCAACAGCCAGGTGCTTCCGCACGCGAAGCAAGCCTCCAACTACGGGGGAGTGATGCTGTGGGATAGATACCGCGATCTTCAGAACGGTTACAGTAACAGCATACTGCCCAATGTGATTAAGTCTAAGCTGCAGGTGTCTGTGGCGTCCGTTTCCGACGCAATTTACCGGTGCGTGTCTAAGGCGTTGAACCGCGTCTTAGATTACTAG 984 0.5376 MASQRLALITLLLTLSALSSSRADNGGIAVYWGQNLNEGSLTTTCDTGNYEIVLLAFLTQFGAGRTPAWNFAGHCDNGAWTPCTELESEIKYCQGKGIKVLLSIGGDSPNYSISSPEDAKEVANYIYTNFLSGNYGPVGSVTLDGVDFDIERTEDYWDNLARELDYFRQTTGRYFYLSAAPQCPTDPIYYLGKAIATQLFDYIFVQFYNNPSCSYASGIPAILNSWDRWVSLVASNNSLFVGVPAAPSAGAGYIPPEELNSQVLPHAKQASNYGGVMLWDRYRDLQNGYSNSILPNVIKSKLQVSVASVSDAIYRCVSKALNRVLDY* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1367 327 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 143 151 IPR001579 GO:0004553|GO:0005975
Vra2g1367 327 PANTHER ENDOCHITINASE 1 293 - -
Vra2g1367 327 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 26 304 IPR001223 GO:0005975
Vra2g1367 327 CDD GH18_hevamine_XipI_class_III 26 295 IPR045321 -
Vra2g1367 327 PANTHER III ACIDIC ENDOCHITINASE, PUTATIVE-RELATED 1 293 - -
Vra2g1367 327 SUPERFAMILY (Trans)glycosidases 24 293 IPR017853 -
Vra2g1367 327 Pfam Glycosyl hydrolases family 18 28 284 IPR001223 GO:0005975
Vra2g1367 327 Gene3D Glycosidases 24 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1367 Vra-Chr2 21817638 21818857 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1367 4 297 Glycoside Hydrolase AT5G24090 49.498 8.38e-97 286