Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1365 ATGGCGTCTCAAAGACTAGCTTTGATCACATTTCTCTTAACCCTTTCCGCTCTTTCTTTCTCAAGCGCCGCTGACAAAGGTGGCATCGCCGTGTACTGGGGGCAAAACCTTAACGAACTCGAATTGACAACCGCATGTGACACTGGTAACTATGAAATTGTGCTCCTCGCTTTCCTCAACCAGTTCGGTGCAGGGAACCCCCCAGCTTGGAACTTCGCCGGTCACTGCGACAATGGTGCCTGGAAACATTGCACTGAACTAGAGTCCGAAATAAAATACTGCCAGGGGAAAGGCATCAAAGTGTTCCTTTCAATTGGAGGAGACAGTCCGAACTACTCAATAAGCTCGCCGGAGGATGCAAAGGAGGTGGCCAACTACATCTACACCAACTTCCTAAGCGGCAATTACGGTCCACTGGGAAGCGTCACGCTGGACGGCGTCGACTTCGACATCGAAAGGACGGAGGATTACTGGGACAACCTTGCAAGGGAACTCGACTACTTCCGACAAACGACAGGGCGTTACTTTTACTTGTCGGCAGCCCCTCAGTGCCCTACAGACCCAATCTACTATCTCGGCAAAGCCATCGCCACCCAACTCTTTGATTACATCTTCGTTCAGTTCTACAACAACCCTAGTTGCTCCATCCGAAGTGGCATCCCCGCTATCTTGAACTCCTGGGACAGGTGGGTGAGCTTGGTCGCCTCCAACAACTCGCTCTTCGTGGGCGTGCCAGCAGCGCCCAGCGCCGGCGATGGTTATATTTCGCCGGAGGACCTCAACACCAAGGTGCTTCCGCACGCGAAGCAAGCCCCCAACTACGGGGGAGTGATGCTGTGGGATAGATACCGCGATCTTCAGAACGGTTACAGTAATAGAATACTGCCCAATGTGATTAAATCTAAGTTGCAGGTGTCTGTGGCGTCCGTTTCCGACGCAATTTACCGGTGCGTGTCTAAGGCGTTGAACCGCGTCTTAGATTACTAG 987 0.5238 MASQRLALITFLLTLSALSFSSAADKGGIAVYWGQNLNELELTTACDTGNYEIVLLAFLNQFGAGNPPAWNFAGHCDNGAWKHCTELESEIKYCQGKGIKVFLSIGGDSPNYSISSPEDAKEVANYIYTNFLSGNYGPLGSVTLDGVDFDIERTEDYWDNLARELDYFRQTTGRYFYLSAAPQCPTDPIYYLGKAIATQLFDYIFVQFYNNPSCSIRSGIPAILNSWDRWVSLVASNNSLFVGVPAAPSAGDGYISPEDLNTKVLPHAKQAPNYGGVMLWDRYRDLQNGYSNRILPNVIKSKLQVSVASVSDAIYRCVSKALNRVLDY* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1365 328 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 144 152 IPR001579 GO:0004553|GO:0005975
Vra2g1365 328 Pfam Glycosyl hydrolases family 18 29 285 IPR001223 GO:0005975
Vra2g1365 328 SUPERFAMILY (Trans)glycosidases 23 293 IPR017853 -
Vra2g1365 328 Gene3D Glycosidases 25 313 - -
Vra2g1365 328 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 27 306 IPR001223 GO:0005975
Vra2g1365 328 CDD GH18_hevamine_XipI_class_III 27 296 IPR045321 -
Vra2g1365 328 PANTHER III ACIDIC ENDOCHITINASE, PUTATIVE-RELATED 1 294 - -
Vra2g1365 328 PANTHER ENDOCHITINASE 1 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1365 Vra-Chr2 21750013 21751229 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1365 5 298 Glycoside Hydrolase AT5G24090 49.000 5.93e-90 269