Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1356 ATGCCGTGTGTTGACTGTGGATTAAGTCATCTCACCCAAATTGAAAAACCAATAATCGTGTGGACGGTTCTGTCTCAAACCCAACCAATTTCGAAGCTTTCAGACAGCAACATGCGGTTAATCCATGTTCTTCTGTTAGGGCTTTTGGCTTTGAATTGCGTTCAAGTTTTTGAATCCAATGCTCAACTCATACCACAAGATGAAGTGAAAGTACTGCAAACAATATCGGATAAACTAGAAAACTTGAACTGGACAGTTACAGAGCGTTCTTGCATAGAGAATGAAGGGTTTAATGGCAAGATGAATATAAACGGTGGTGACATTCAGAGGAATGTCACATGCGATTGCAACTTCCAAAATGGCACAGTTTGCCATGTTGATAACATCTTTCTCAAGGGTCAAAATATATCTGGAGTTTTTCCCAGTGAATTTGGAAATCTCACCCATCTGAAAGTGCTTGATCTTTCCCGCAACTATCTCAACGGCTCGCTTCCAAAAAGTTTTCCTCCCAACTCTTCGCTGATCAATTTGTTCCTTCTGGGAAACCGACTAAGTGGTCAAATTCCCACAGAAATTGGTGATATTGCTGGTCTGCAGGAACTGGTCTTGGAATGTAACCAACTTGAAGGACCACTTCCTCCTAATCTTGGGAATTTGAGCAATTTGAGGAGACTGCTTCTTTCTGCAAATAATTTCACAGGGACCATACCAGAAACATTTGGCGAACTTCGAAATTTGACTGATTTTAGGATAGATGGAAGCAGTTTATCCGGACCAATACCCAGTTTCATTGGGAACTGGACCCAACTTGACAGACTGGATTTGCAGGGAACAAATATGGAAGGCCCAATTCCTTCCACTATATCTCAGTTGAAACTTTTGACTGAATTGAGAATAACTGATTTGAAAGGACCAACTATGGATTTTCCTGATCTGAAGGAGTTGAAAAACTTGAAACGACTGGACCTAAGCTTCAACATGTTAACTGGTCCAGTCCCAGAATCAATACAAAATATGGAAAGTCTAGATTTCTTGTTTCTGACAAATAATTCTCTGAGTGGAGAAATTCAGGACTGGATACTGAGCTTCAAAGAAAACATAGATTTATCTTACAACAATTTTACCAAGTCTTCTGCATCTAGCTGTCAGCTCGCGGATGTGAACTTGGCTTCAAGCCATTCTTCTTCAGCGGTAACTACAGCTTCAACTTTTTGTTTGAAGAGGAATCTTCCTTGTGCAGGAGAACCCCAGTATAGGTCATTGTTCATAAACTGTGGAGGAGCTGAGGGGGAGTTTGAAGGCAATAACTATGTAGGTGACCTCAGCCGAACTGGCATTTCAAACTTTGATCTTAGAAATGAAGGACAATGGGCCTATAGCAGCACAGGAGTATTTATGGGAAACAATGATGCAGATTTTGTAGCCGAAAATACATTTTCTTTGAATATTAGTGGTCCAGGATATTACCAAAGCGCTCGCCTTTCTCCTATGTCGCTTAACTACTATGGCTTTTGTTTGCCAAACGGACAATATAAAGTGAAGCTCCATTTTGCTGAGATAATGTATACTGATGATCAAACTTTTAGAAGTTTAGGAAGGCGCATATTTGATGTTTCAGTTCAAGGTGTTAGATATTTGAAAGACTTTAACATTGCAGAAGAAGCTGGTGGAGTTGGAAAGGGCATCACTATGGAGTATGATGTTGATGTTGATGATGGTACCTTGGAAATCCACTTATACTGGGCAGGGAAAGGAACTACTTCCATTCCTGAGAGAGGTGTATATGGACCTCTGATATCTGCTATTGAGATGATACCAAACTTTGAGAATCCTTCAAAAGGGCTGTCTGCTGGAGTCATTGTTGGAATTGTTGCTGCATCATGTGGGCTTGTCATATTGATACTGGTTGTCCTTTGGAAGATGGGTCTTCTTTGTAGGAAAGATACAACGGATAAAGAACTTCTAGATATGAAAACGGGCTACTACAGCTTAAGACAAATTAAAGCAGCTACTAATAATTTTGACCCTGCAAATAAGATAGGTGAAGGAGGATTTGGGCCTGTATACAAGGGTGTGCTGCCAGACGGTGATGTGATTGCTGTTAAGCAGCTCTCCTCCAAATCAAAGCAGGGGAACCGAGAATTTGTCAATGAAATTGGAATGATATCTGCTTTGCAACATCCTAATCTGGTGAAGCTATATGGCTGTTGCATTGAAGGAAACCAGTTGCTACTGATATACGAATACATGGAGAACAACAGTCTTGCTCGTGCACTTTTTGGTGGAGAAGAAGTGAAGCTAAACTTAGACTGGCCTACAAGAATGAAGATCTGTGTGGGGATAGCAAGGGGATTAGCTTATCTTCACGAAGAATCAAGGTTGAAAATAGTACACAGGGACATTAAGGCAACCAATGTCTTACTTGACAGGGAACTGAATGCCAAGATCTCTGACTTTGGTTTAGCTAAGCTTGATGAAGAAGAAAATACTCATATCAGTACACGCATAGCTGGAACAATTGGTTACATGGCTCCAGAATATGCTATGAGGGGCTACTTGACGGATAAAGCAGATGTATATAGCTTTGGAGTTGTAGCTTTAGAGATTGTCAGTGGAAAAAGCAACACAAAATACAGACCAAAGGAAGAGTTTGTATACCTTCTAGATTGGGCTTATGTTCTCCAAGAGCAGGGAAACCTTCTGGAATTGGTGGATCCAAGTCTTGGTTCAAATTACTCTCAAGAGGAAGCCATGAGAATGCTGAGCTTGGCACTCTTGTGCACCAATCCTTCTCCCACTCTTAGACCAACAATGTCTTCTGTTGTGAGAATGCTTGAAGGAAAAATTCCAATCCAAGCACCTATAATCAAGCGCAGTGAGAACAACCAAGATTTAAGATTTAAAGCTTTTGAGTTGCTATCACAGGACAGCCAAACTCATGTTTCATCTGCGTACTCTCAAGAAAGTATGAAGCAAGAAAACAAATCAGAAGATGGGCCATGGCTTGACTCCTCCCTATATCTTCAAAGTGGAGATGGTCATTCTTCAAGCAGTAAACTAATCTAA 3066 0.4074 MPCVDCGLSHLTQIEKPIIVWTVLSQTQPISKLSDSNMRLIHVLLLGLLALNCVQVFESNAQLIPQDEVKVLQTISDKLENLNWTVTERSCIENEGFNGKMNINGGDIQRNVTCDCNFQNGTVCHVDNIFLKGQNISGVFPSEFGNLTHLKVLDLSRNYLNGSLPKSFPPNSSLINLFLLGNRLSGQIPTEIGDIAGLQELVLECNQLEGPLPPNLGNLSNLRRLLLSANNFTGTIPETFGELRNLTDFRIDGSSLSGPIPSFIGNWTQLDRLDLQGTNMEGPIPSTISQLKLLTELRITDLKGPTMDFPDLKELKNLKRLDLSFNMLTGPVPESIQNMESLDFLFLTNNSLSGEIQDWILSFKENIDLSYNNFTKSSASSCQLADVNLASSHSSSAVTTASTFCLKRNLPCAGEPQYRSLFINCGGAEGEFEGNNYVGDLSRTGISNFDLRNEGQWAYSSTGVFMGNNDADFVAENTFSLNISGPGYYQSARLSPMSLNYYGFCLPNGQYKVKLHFAEIMYTDDQTFRSLGRRIFDVSVQGVRYLKDFNIAEEAGGVGKGITMEYDVDVDDGTLEIHLYWAGKGTTSIPERGVYGPLISAIEMIPNFENPSKGLSAGVIVGIVAASCGLVILILVVLWKMGLLCRKDTTDKELLDMKTGYYSLRQIKAATNNFDPANKIGEGGFGPVYKGVLPDGDVIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYMENNSLARALFGGEEVKLNLDWPTRMKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDRELNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTKYRPKEEFVYLLDWAYVLQEQGNLLELVDPSLGSNYSQEEAMRMLSLALLCTNPSPTLRPTMSSVVRMLEGKIPIQAPIIKRSENNQDLRFKAFELLSQDSQTHVSSAYSQESMKQENKSEDGPWLDSSLYLQSGDGHSSSSKLI* 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1356 1021 Pfam Protein tyrosine and serine/threonine kinase 678 944 IPR001245 GO:0004672|GO:0006468
Vra2g1356 1021 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 104 321 - -
Vra2g1356 1021 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 392 1006 - -
Vra2g1356 1021 Gene3D Phosphorylase Kinase; domain 1 641 749 - -
Vra2g1356 1021 SMART LRR_typ_2 147 170 IPR003591 -
Vra2g1356 1021 SMART LRR_typ_2 219 243 IPR003591 -
Vra2g1356 1021 SMART LRR_typ_2 315 338 IPR003591 -
Vra2g1356 1021 Pfam Malectin domain 421 602 IPR021720 -
Vra2g1356 1021 Pfam Leucine rich repeat 125 184 IPR001611 GO:0005515
Vra2g1356 1021 ProSiteProfiles Protein kinase domain profile. 674 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1356 1021 Pfam Leucine Rich Repeat 317 339 IPR001611 GO:0005515
Vra2g1356 1021 CDD STKc_IRAK 680 947 - -
Vra2g1356 1021 ProSitePatterns Serine/Threonine protein kinases active-site signature. 796 808 IPR008271 GO:0004672|GO:0006468
Vra2g1356 1021 PANTHER - 104 321 - -
Vra2g1356 1021 PANTHER - 392 1006 - -
Vra2g1356 1021 Gene3D Ribonuclease Inhibitor 100 403 IPR032675 -
Vra2g1356 1021 MobiDBLite consensus disorder prediction 981 1021 - -
Vra2g1356 1021 Gene3D - 420 607 - -
Vra2g1356 1021 SUPERFAMILY Protein kinase-like (PK-like) 657 946 IPR011009 -
Vra2g1356 1021 SUPERFAMILY L domain-like 121 375 - -
Vra2g1356 1021 Gene3D Transferase(Phosphotransferase) domain 1 750 967 - -
Vra2g1356 1021 SMART serkin_6 674 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1356 Vra-Chr2 21554808 21566005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1356 46 1012 Receptor kinase-like Gene Family AT1G53440 58.782 0.0 1159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra2g1356 PK_Tyr_Ser-Thr 8.6e-49 CL0016